An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 14026 | 2012 |
A census of human transcription factors: function, expression and evolution JM Vaquerizas, SK Kummerfeld, SA Teichmann, NM Luscombe Nature Reviews Genetics 10 (4), 252-263, 2009 | 1922 | 2009 |
A user’s guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS Biol 9 (4), e1001046, 2011 | 1449 | 2011 |
DNA-binding specificities of human transcription factors A Jolma, J Yan, T Whitington, J Toivonen, KR Nitta, P Rastas, ... Cell 152 (1), 327-339, 2013 | 1376 | 2013 |
Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities A Jolma, T Kivioja, J Toivonen, L Cheng, G Wei, M Enge, M Taipale, ... Genome research 20 (6), 861-873, 2010 | 530 | 2010 |
Chromatin architecture emerges during zygotic genome activation independent of transcription CB Hug, AG Grimaldi, K Kruse, JM Vaquerizas Cell 169 (2), 216-228. e19, 2017 | 443 | 2017 |
BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments F Al-Shahrour, P Minguez, J Tárraga, D Montaner, E Alloza, ... Nucleic acids research 34 (suppl_2), W472-W476, 2006 | 325 | 2006 |
BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments F Al-Shahrour, P Minguez, JM Vaquerizas, L Conde, J Dopazo Nucleic acids research 33 (suppl_2), W460-W464, 2005 | 305 | 2005 |
Early embryonic-like cells are induced by downregulating replication-dependent chromatin assembly T Ishiuchi, R Enriquez-Gasca, E Mizutani, A Bošković, C Ziegler-Birling, ... Nature structural & molecular biology 22 (9), 662-671, 2015 | 300 | 2015 |
Nuclear Pore Proteins Nup153 and Megator Define Transcriptionally Active Regions in the Drosophila Genome JM Vaquerizas, R Suyama, J Kind, K Miura, NM Luscombe, A Akhtar PLoS genetics 6 (2), e1000846, 2010 | 271 | 2010 |
PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes L Conde, JM Vaquerizas, H Dopazo, L Arbiza, J Reumers, F Rousseau, ... Nucleic acids research 34 (suppl_2), W621-W625, 2006 | 261 | 2006 |
GEPAS: A web-based resource for microarray gene expression data analysis J Herrero, F Al-Shahrour, R Diaz-Uriarte, A Mateos, JM Vaquerizas, ... Nucleic acids research 31 (13), 3461-3467, 2003 | 229 | 2003 |
Cell–matrix signals specify bone endothelial cells during developmental osteogenesis UH Langen, ME Pitulescu, JM Kim, R Enriquez-Gasca, KK Sivaraj, ... Nature cell biology 19 (3), 189-201, 2017 | 200 | 2017 |
Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila J Kind, JM Vaquerizas, P Gebhardt, M Gentzel, NM Luscombe, P Bertone, ... cell 133 (5), 813-828, 2008 | 177 | 2008 |
The nonspecific lethal complex is a transcriptional regulator in Drosophila SJ Raja, I Charapitsa, T Conrad, JM Vaquerizas, P Gebhardt, H Holz, ... Molecular cell 38 (6), 827-841, 2010 | 170 | 2010 |
A molecular roadmap for the emergence of early-embryonic-like cells in culture D Rodriguez-Terrones, X Gaume, T Ishiuchi, A Weiss, A Kopp, K Kruse, ... Nature genetics 50 (1), 106-119, 2018 | 159 | 2018 |
Next station in microarray data analysis: GEPAS D Montaner, J Tárraga, J Huerta-Cepas, J Burguet, JM Vaquerizas, ... Nucleic Acids Research 34 (suppl_2), W486-W491, 2006 | 147 | 2006 |
Cohesin disrupts polycomb-dependent chromosome interactions in embryonic stem cells JDP Rhodes, A Feldmann, B Hernández-Rodríguez, N Díaz, JM Brown, ... Cell reports 30 (3), 820-835. e10, 2020 | 135 | 2020 |
Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets J Reimand, JM Vaquerizas, AE Todd, J Vilo, NM Luscombe Nucleic acids research 38 (14), 4768-4777, 2010 | 130 | 2010 |
FAN-C: a feature-rich framework for the analysis and visualisation of chromosome conformation capture data K Kruse, CB Hug, JM Vaquerizas Genome biology 21, 1-19, 2020 | 127 | 2020 |