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Retrotransposon insertions in the clonal evolution of pancreatic ductal adenocarcinoma N Rodić, JP Steranka, A Makohon-Moore, A Moyer, P Shen, R Sharma, ... Nature medicine 21 (9), 1060-1064, 2015 | 159 | 2015 |
Structural variants caused by Alu insertions are associated with risks for many human diseases LM Payer, JP Steranka, WR Yang, M Kryatova, S Medabalimi, D Ardeljan, ... Proceedings of the National Academy of Sciences 114 (20), E3984-E3992, 2017 | 134 | 2017 |
Human transposon insertion profiling: analysis, visualization and identification of somatic LINE-1 insertions in ovarian cancer Z Tang, JP Steranka, S Ma, M Grivainis, N Rodić, CRL Huang, IM Shih, ... Proceedings of the National Academy of Sciences 114 (5), E733-E740, 2017 | 104 | 2017 |
Cell fitness screens reveal a conflict between LINE-1 retrotransposition and DNA replication D Ardeljan, JP Steranka, C Liu, Z Li, MS Taylor, LM Payer, M Gorbounov, ... Nature structural & molecular biology 27 (2), 168-178, 2020 | 94 | 2020 |
Alu insertion variants alter mRNA splicing LM Payer, JP Steranka, D Ardeljan, JN Walker, KC Fitzgerald, ... Nucleic acids research 47 (1), 421-431, 2019 | 78 | 2019 |
LINE-1 ORF2p expression is nearly imperceptible in human cancers D Ardeljan, X Wang, M Oghbaie, MS Taylor, D Husband, V Deshpande, ... Mobile dna 11, 1-19, 2020 | 56 | 2020 |
Identification of replication competent murine gammaretroviruses in commonly used prostate cancer cell lines KS Sfanos, AL Aloia, JL Hicks, DM Esopi, JP Steranka, W Shao, ... PloS one 6 (6), e20874, 2011 | 54 | 2011 |
Alu insertion variants alter gene transcript levels LM Payer, JP Steranka, MS Kryatova, G Grillo, M Lupien, PP Rocha, ... Genome research 31 (12), 2236-2248, 2021 | 31 | 2021 |
Polymorphic mobile element insertions contribute to gene expression and alternative splicing in human tissues X Cao, Y Zhang, LM Payer, H Lords, JP Steranka, KH Burns, J Xing Genome biology 21, 1-19, 2020 | 31 | 2020 |
Transposon insertion profiling by sequencing (TIPseq) for mapping LINE-1 insertions in the human genome JP Steranka, Z Tang, M Grivainis, CRL Huang, LM Payer, FOR Rego, ... Mobile DNA 10, 1-14, 2019 | 28 | 2019 |
Somatic retrotransposition is infrequent in glioblastomas P Achanta, JP Steranka, Z Tang, N Rodić, R Sharma, WR Yang, S Ma, ... Mobile DNA 7, 1-9, 2016 | 25 | 2016 |
Insertion and deletion polymorphisms of the ancient AluS family in the human genome MS Kryatova, JP Steranka, KH Burns, LM Payer Mobile DNA 8, 1-13, 2017 | 15 | 2017 |
Fine mapping of V (D) J recombinase mediated rearrangements in human lymphoid malignancies E Halper-Stromberg, J Steranka, N Giraldo-Castillo, T Fuller, S Desiderio, ... BMC genomics 14, 1-12, 2013 | 9 | 2013 |
Human transposon insertion profiling by sequencing (TIPseq) to map LINE-1 insertions in single cells W McKerrow, Z Tang, JP Steranka, LM Payer, JD Boeke, D Keefe, ... Philosophical Transactions of the Royal Society B 375 (1795), 20190335, 2020 | 8 | 2020 |
Visualization and probability-based scoring of structural variants within repetitive sequences E Halper-Stromberg, J Steranka, KH Burns, S Sabunciyan, RA Irizarry Bioinformatics 30 (11), 1514-1521, 2014 | 5 | 2014 |