| Identification of functional elements and regulatory circuits by Drosophila modENCODE S Roy, J Ernst, PV Kharchenko, P Kheradpour, N Negre, ML Eaton, ... Science 330 (6012), 1787-1797, 2010 | 1096 | 2010 |
| Imbalance of regulatory and cytotoxic SARS-CoV-2-reactive CD4+ T cells in COVID-19 BJ Meckiff, C Ramírez-Suástegui, V Fajardo, SJ Chee, A Kusnadi, ... Cell, 2020 | 603* | 2020 |
| Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts F Ay, TL Bailey, WS Noble Genome research 24 (6), 999-1011, 2014 | 518 | 2014 |
| Integrative detection and analysis of structural variation in cancer genomes JR Dixon, J Xu, V Dileep, Y Zhan, F Song, VT Le, GG Yardımcı, ... Nature genetics 50 (10), 1388-1398, 2018 | 344 | 2018 |
| A statistical approach for inferring the 3D structure of the genome N Varoquaux, F Ay, WS Noble, JP Vert Bioinformatics 30 (12), i26-i33, 2014 | 286 | 2014 |
| Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression F Ay, EM Bunnik, N Varoquaux, SM Bol, J Prudhomme, JP Vert, WS Noble, ... Genome research 24 (6), 974-988, 2014 | 253 | 2014 |
| Bipartite structure of the inactive mouse X chromosome X Deng, W Ma, V Ramani, A Hill, F Yang, F Ay, JB Berletch, CA Blau, ... Genome biology 16 (1), 1-21, 2015 | 245 | 2015 |
| Severely ill COVID-19 patients display impaired exhaustion features in SARS-CoV-2-reactive CD8+ T cells A Kusnadi, C Ramírez-Suástegui, V Fajardo, SJ Chee, BJ Meckiff, ... Science Immunology 6 (55), 2021 | 228* | 2021 |
| Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes W Ma, F Ay, C Lee, G Gulsoy, X Deng, S Cook, J Hesson, C Cavanaugh, ... Nature Methods, 2014 | 216 | 2014 |
| Single-cell transcriptomic analysis of tissue-resident memory T cells in human lung cancer J Clarke, B Panwar, A Madrigal, D Singh, R Gujar, O Wood, SJ Chee, ... Journal of Experimental Medicine 216 (9), 2128-2149, 2019 | 213 | 2019 |
| Analysis methods for studying the 3D architecture of the genome F Ay, WS Noble Genome Biology 16 (1), 1-15, 2015 | 190 | 2015 |
| Topologically-associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication timing program V Dileep, F Ay, J Sima, DL Vera, WS Noble, DM Gilbert Genome Research, gr. 183699.114, 2015 | 180 | 2015 |
| Identification of significant chromatin contacts from HiChIP data by FitHiChIP S Bhattacharyya, V Chandra, P Vijayanand, F Ay Nature communications 10 (1), 4221, 2019 | 176 | 2019 |
| Identifying cis elements for spatiotemporal control of mammalian dna replication J Sima, A Chakraborty, V Dileep, M Michalski, KN Klein, NP Holcomb, ... Cell 176 (4), 816-830. e18, 2019 | 172 | 2019 |
| Measuring the reproducibility and quality of Hi-C data GG Yardımcı, H Ozadam, MEG Sauria, O Ursu, KK Yan, T Yang, ... Genome biology 20, 1-19, 2019 | 169 | 2019 |
| Identifying statistically significant chromatin contacts from Hi-C data with FitHiC2 A Kaul, S Bhattacharyya, F Ay Nature Protocols 15 (3), 991-1012, 2020 | 157 | 2020 |
| Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks D Marbach, S Roy, F Ay, PE Meyer, R Candeias, T Kahveci, CA Bristow, ... Genome Research 22 (7), 1334-1349, 2012 | 146 | 2012 |
| A predictive modeling approach for cell line-specific long-range regulatory interactions S Roy, AF Siahpirani, D Chasman, S Knaack, F Ay, R Stewart, M Wilson, ... Nucleic acids research 43 (18), 8694-8712, 2015 | 138 | 2015 |
| Mustache: multi-scale detection of chromatin loops from Hi-C and Micro-C maps using scale-space representation A Roayaei Ardakany, HT Gezer, S Lonardi, F Ay Genome Biology 21, 2020 | 137 | 2020 |
| Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages EM Bunnik, KB Cook, N Varoquaux, G Batugedara, J Prudhomme, A Cort, ... Nature communications 9 (1), 1910, 2018 | 115 | 2018 |
William Stafford NobleProfessor of Genome Sciences, University of Washington在 uw.edu 的电子邮件经过验证
