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Michael Baxa
Michael Baxa
在 uchicago.edu 的电子邮件经过验证 - 首页
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Loss of conformational entropy in protein folding calculated using realistic ensembles and its implications for NMR-based calculations
MC Baxa, EJ Haddadian, JM Jumper, KF Freed, TR Sosnick
Proceedings of the National Academy of Sciences 111 (43), 15396-15401, 2014
1172014
Benchmarking all-atom simulations using hydrogen exchange
JJ Skinner, W Yu, EK Gichana, MC Baxa, JR Hinshaw, KF Freed, ...
Proceedings of the National Academy of Sciences 111 (45), 15975-15980, 2014
822014
Characterizing the protein folding transition state using ψ analysis
TR Sosnick, BA Krantz, RS Dothager, M Baxa
Chemical reviews 106 (5), 1862-1876, 2006
622006
Quantifying the structural requirements of the folding transition state of protein A and other systems
MC Baxa, KF Freed, TR Sosnick
Journal of molecular biology 381 (5), 1362-1381, 2008
382008
Perplexing cooperative folding and stability of a low-sequence complexity, polyproline 2 protein lacking a hydrophobic core
ZP Gates, MC Baxa, W Yu, JA Riback, H Li, B Roux, SBH Kent, ...
Proceedings of the National Academy of Sciences 114 (9), 2241-2246, 2017
342017
Context and force field dependence of the loss of protein backbone entropy upon folding using realistic denatured and native state ensembles
MC Baxa, EJ Haddadian, AK Jha, KF Freed, TR Sosnick
Journal of the American Chemical Society 134 (38), 15929-15936, 2012
342012
Even with nonnative interactions, the updated folding transition states of the homologs Proteins G & L are extensive and similar
MC Baxa, W Yu, AN Adhikari, L Ge, Z Xia, R Zhou, KF Freed, TR Sosnick
Proceedings of the National Academy of Sciences 112 (27), 8302-8307, 2015
242015
HDX-MS performed on BtuB in E. coli outer membranes delineates the luminal domain’s allostery and unfolding upon B12 and TonB binding
AM Zmyslowski, MC Baxa, IA Gagnon, TR Sosnick
Proceedings of the National Academy of Sciences 119 (20), e2119436119, 2022
212022
Metal binding kinetics of bi-histidine sites used in ψ analysis: Evidence of high-energy protein folding intermediates
GL Bosco, M Baxa, TR Sosnick
Biochemistry 48 (13), 2950-2959, 2009
182009
A “Link‐Psi” strategy using crosslinking indicates that the folding transition state of ubiquitin is not very malleable
AT Shandiz, MC Baxa, TR Sosnick
Protein Science 21 (6), 819-827, 2012
142012
ψ-Constrained Simulations of Protein Folding Transition States: Implications for Calculating ϕ
MC Baxa, KF Freed, TR Sosnick
Journal of molecular biology 386 (4), 920-928, 2009
122009
Prediction and validation of a protein’s free energy surface using hydrogen exchange and (importantly) its denaturant dependence
X Peng, M Baxa, N Faruk, JR Sachleben, S Pintscher, IA Gagnon, ...
Journal of chemical theory and computation 18 (1), 550-561, 2021
102021
Cooperative folding near the downhill limit determined with amino acid resolution by hydrogen exchange
W Yu, MC Baxa, I Gagnon, KF Freed, TR Sosnick
Proceedings of the National Academy of Sciences 113 (17), 4747-4752, 2016
92016
Revealing what gets buried first in protein folding
TR Sosnick, MC Baxa
Proceedings of the National Academy of Sciences 110 (42), 16704-16705, 2013
42013
Engineered metal-binding sites to probe protein folding transition states: Psi analysis
MC Baxa, TR Sosnick
Protein Folding: Methods and Protocols, 31-63, 2022
22022
How hydrophobicity, side chains, and salt affect the dimensions of disordered proteins
MC Baxa, X Lin, CD Mukinay, S Chakravarthy, JR Sachleben, S Antilla, ...
Protein Science 33 (5), e4986, 2024
2024
Effects of hydrophobic sequence patterns on disordered protein conformational ensembles
CD Mukinay, MC Baxa, TR Sosnick, PL Clark
Biophysical Journal 123 (3), 169a-170a, 2024
2024
Temperature-Dependent Fold-Switching Mechanism of the Circadian Clock Protein KaiB
A Liwang, A Dinner, T Sosnick, LP Wang, CL Partch, N Zhang, D Sood, ...
bioRxiv, 2024.05. 21.594594, 2024
2024
Investigating the sequence properties that govern disorder and secretion of bacterial virulence proteins
C Mukinay, M Baxa, TR Sosnick, PL Clark
Biophysical Journal 122 (3), 201a, 2023
2023
Characterizing the sequence determinants of protein disorder and its impact on virulence protein secretion
C Mukinay, M Bowman, M Baxa, TR Sosnick, PL Clark
Biophysical Journal 121 (3), 57a, 2022
2022
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