Investigation into the annotation of protocol sequencing steps in the sequence read archive JJ Alnasir, HP Shanahan Gigascience 4 (1), s13742-015-0064-7, 2015 | 29 | 2015 |
Survey of Information Encoding Techniques for DNA T Heinis, JJ Alnasir, R Sokolovskii ACM Computational Surveys, 2023 | 22 | 2023 |
The application of hadoop in structural bioinformatics JJ Alnasir, HP Shanahan BioRxiv, 376467, 2018 | 22 | 2018 |
Fifteen quick tips for success with HPC, i.e., responsibly BASHing that Linux cluster JJ Alnasir PLOS Computational Biology 17 (8), 2021 | 8 | 2021 |
Distributed Computing in a Pandemic: A Review of Technologies available for Tackling COVID-19 JJ Alnasir https://revistas.usal.es/cinco/index.php/2255-2863/article/view/27337 11 (1 …, 2020 | 7 | 2020 |
A Novel Method to Detect Bias in Short Read NGS Data JJ Alnasir, HP Shanahan Journal of integrative bioinformatics 14 (3), 2017 | 4 | 2017 |
DNA Storage Error Simulator: A Tool for Simulating Errors in Synthesis, Storage, PCR and Sequencing JJ Alnasir, T Heinis https://arxiv.org/abs/2205.14437, 2022 | 3 | 2022 |
Transcriptomics: quantifying non-uniform read distribution using MapReduce JJ Alnasir, HP Shanahan International Journal of Foundations of Computer Science 29 (08), 1355-1372, 2018 | 2 | 2018 |
Encoding Information into DNA J Alnasir, TH PI | | 2021 |
Encoding information into DNA (DNA Storage) JJ Alnasir Mathematical Foundations in Bioinformatics (MatBio 2021), London, 2021 | | 2021 |
Intra-exon motif correlations as a proxy measure for mean per-tile sequence quality data in RNA-Seq JJ Alnasir, HP Shanahan bioRxiv, 2020 | | 2020 |
Fostering Reproducibility, Standardisation, Fault-tolerance and Deployability in Computational Pipelines using Nextflow Workflow Language - Adoption and Training at the ICR JJ Alnasir Mathematical Foundations in Bioinformatics (MatBio '19), London, 2019 | | 2019 |
Cyclisation of Cell-Penetrating PDZ-Binding Peptides Directed to PSD95 B Austen, K Duberly, J Alnasir, S Dabhi, N Wijesiriwardana American Research Journals of Chemistry 3 (1), 1-11, 2019 | | 2019 |
The Analysis of High-Throughput Biological Datasets Utilising Distributed Computing J Alnasir Royal Holloway, University of London, 2018 | | 2018 |
Transcriptomics: Leveraging a MapReduce algorithm and Python for gene-expression analysis on Apache Spark JJ Alnasir, HP Shanahan Mathematical Foundations in Bioinformatics (MatBio '16), London, 2016 | | 2016 |
Transcriptomics on Spark Workshop – Introducing Hercules – an Apache Spark MapReduce algorithm for quantifying non-uniform gene expression J Alnasir, H Shanahan CloudTech'16, Morocco, 2016 | | 2016 |
Annotation of next-generation sequencing protocol steps in the SRA (sequence read archive) and Big data for Science JJ Alnasir, HP Shanahan Developing data-driven Biology in Morocco - Tangier, Morocco, 2015 | | 2015 |
PDB-Hadoop: Parallelising User applications on the Protein Databank using Apache Hadoop J Alnasir, H Shanahan ISMB: 3DSig Structural Bioinformatics and Computational Biophysics, Dublin, 2015 | | 2015 |
Characterisation of Cyclic Neuro-protective PDZ binding ligands J Al-Nasir St. Georges Hospital Medical School & Kingston University, 0 | | |