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Dr. Jamie Alnasir
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引用次数
引用次数
年份
Investigation into the annotation of protocol sequencing steps in the sequence read archive
JJ Alnasir, HP Shanahan
Gigascience 4 (1), s13742-015-0064-7, 2015
292015
Survey of Information Encoding Techniques for DNA
T Heinis, JJ Alnasir, R Sokolovskii
ACM Computational Surveys, 2023
222023
The application of hadoop in structural bioinformatics
JJ Alnasir, HP Shanahan
BioRxiv, 376467, 2018
222018
Fifteen quick tips for success with HPC, i.e., responsibly BASHing that Linux cluster
JJ Alnasir
PLOS Computational Biology 17 (8), 2021
82021
Distributed Computing in a Pandemic: A Review of Technologies available for Tackling COVID-19
JJ Alnasir
https://revistas.usal.es/cinco/index.php/2255-2863/article/view/27337 11 (1 …, 2020
72020
A Novel Method to Detect Bias in Short Read NGS Data
JJ Alnasir, HP Shanahan
Journal of integrative bioinformatics 14 (3), 2017
42017
DNA Storage Error Simulator: A Tool for Simulating Errors in Synthesis, Storage, PCR and Sequencing
JJ Alnasir, T Heinis
https://arxiv.org/abs/2205.14437, 2022
32022
Transcriptomics: quantifying non-uniform read distribution using MapReduce
JJ Alnasir, HP Shanahan
International Journal of Foundations of Computer Science 29 (08), 1355-1372, 2018
22018
Encoding Information into DNA
J Alnasir, TH PI
2021
Encoding information into DNA (DNA Storage)
JJ Alnasir
Mathematical Foundations in Bioinformatics (MatBio 2021), London, 2021
2021
Intra-exon motif correlations as a proxy measure for mean per-tile sequence quality data in RNA-Seq
JJ Alnasir, HP Shanahan
bioRxiv, 2020
2020
Fostering Reproducibility, Standardisation, Fault-tolerance and Deployability in Computational Pipelines using Nextflow Workflow Language - Adoption and Training at the ICR
JJ Alnasir
Mathematical Foundations in Bioinformatics (MatBio '19), London, 2019
2019
Cyclisation of Cell-Penetrating PDZ-Binding Peptides Directed to PSD95
B Austen, K Duberly, J Alnasir, S Dabhi, N Wijesiriwardana
American Research Journals of Chemistry 3 (1), 1-11, 2019
2019
The Analysis of High-Throughput Biological Datasets Utilising Distributed Computing
J Alnasir
Royal Holloway, University of London, 2018
2018
Transcriptomics: Leveraging a MapReduce algorithm and Python for gene-expression analysis on Apache Spark
JJ Alnasir, HP Shanahan
Mathematical Foundations in Bioinformatics (MatBio '16), London, 2016
2016
Transcriptomics on Spark Workshop – Introducing Hercules – an Apache Spark MapReduce algorithm for quantifying non-uniform gene expression
J Alnasir, H Shanahan
CloudTech'16, Morocco, 2016
2016
Annotation of next-generation sequencing protocol steps in the SRA (sequence read archive) and Big data for Science
JJ Alnasir, HP Shanahan
Developing data-driven Biology in Morocco - Tangier, Morocco, 2015
2015
PDB-Hadoop: Parallelising User applications on the Protein Databank using Apache Hadoop
J Alnasir, H Shanahan
ISMB: 3DSig Structural Bioinformatics and Computational Biophysics, Dublin, 2015
2015
Characterisation of Cyclic Neuro-protective PDZ binding ligands
J Al-Nasir
St. Georges Hospital Medical School & Kingston University, 0
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