| The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Nature biotechnology 28 (9), 935-942, 2010 | 792 | 2010 |
| Rule-based modeling of biochemical systems with BioNetGen JR Faeder, ML Blinov, WS Hlavacek Systems biology, 113-167, 2009 | 543 | 2009 |
| BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains ML Blinov, JR Faeder, B Goldstein, WS Hlavacek Bioinformatics 20 (17), 3289-3291, 2004 | 515 | 2004 |
| Rules for modeling signal-transduction systems WS Hlavacek, JR Faeder, ML Blinov, RG Posner, M Hucka, W Fontana Science's STKE 2006 (344), re6-re6, 2006 | 457 | 2006 |
| Virtual Cell modelling and simulation software environment II Moraru, JC Schaff, BM Slepchenko, ML Blinov, F Morgan, ... IET systems biology 2 (5), 352-362, 2008 | 296 | 2008 |
| The complexity of complexes in signal transduction WS Hlavacek, JR Faeder, ML Blinov, AS Perelson, B Goldstein Biotechnology and bioengineering 84 (7), 783-794, 2003 | 258 | 2003 |
| Investigation of early events in FcεRI-mediated signaling using a detailed mathematical model JR Faeder, WS Hlavacek, I Reischl, ML Blinov, H Metzger, A Redondo, ... The Journal of Immunology 170 (7), 3769-3781, 2003 | 221 | 2003 |
| SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 212 | 2020 |
| A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity ML Blinov, JR Faeder, B Goldstein, WS Hlavacek Biosystems 83 (2-3), 136-151, 2006 | 207 | 2006 |
| Rule‐based modeling of biochemical networks JR Faeder, ML Blinov, B Goldstein, WS Hlavacek Complexity 10 (4), 22-41, 2005 | 178 | 2005 |
| Report: NIA workshop on measures of physiologic resiliencies in human aging EC Hadley, GA Kuchel, AB Newman, HG Allore, JM Bartley, ... The Journals of Gerontology: Series A 72 (7), 980-990, 2017 | 141 | 2017 |
| Graph theory for rule-based modeling of biochemical networks ML Blinov, J Yang, JR Faeder, WS Hlavacek Transactions on Computational Systems Biology VII, 89-106, 2006 | 114 | 2006 |
| Molecular machines or pleiomorphic ensembles: signaling complexes revisited BJ Mayer, ML Blinov, LM Loew Journal of biology 8, 1-8, 2009 | 112 | 2009 |
| Two MYB proteins in a self-organizing activator-inhibitor system produce spotted pigmentation patterns B Ding, EL Patterson, SV Holalu, J Li, GA Johnson, LE Stanley, ... Current Biology 30 (5), 802-814. e8, 2020 | 103 | 2020 |
| Combinatorial complexity and dynamical restriction of network flows in signal transduction JR Faeder, ML Blinov, B Goldstein, WS Hlavacek Systems Biology 2 (1), 5-15, 2005 | 81 | 2005 |
| Modeling the early signaling events mediated by FcεRI B Goldstein, JR Faeder, WS Hlavacek, ML Blinov, A Redondo, C Wofsy Molecular Immunology 38 (16-18), 1213-1219, 2002 | 65 | 2002 |
| Graphical rule-based representation of signal-transduction networks JR Faeder, ML Blinov, WS Hlavacek Proceedings of the 2005 ACM symposium on Applied computing, 133-140, 2005 | 61 | 2005 |
| PMAP: databases for analyzing proteolytic events and pathways Y Igarashi, E Heureux, KS Doctor, P Talwar, S Gramatikova, K Gramatikoff, ... Nucleic acids research 37 (suppl_1), D611-D618, 2009 | 60 | 2009 |
| Guidelines for visualizing and annotating rule-based models LA Chylek, B Hu, ML Blinov, T Emonet, JR Faeder, B Goldstein, ... Molecular BioSystems 7 (10), 2779-2795, 2011 | 57 | 2011 |
| Systems biology graphical notation: process description language level 1 version 2.0 A Rougny, V Touré, S Moodie, I Balaur, T Czauderna, H Borlinghaus, ... Journal of integrative bioinformatics 16 (2), 20190022, 2019 | 54 | 2019 |
