SMNN: batch effect correction for single-cell RNA-seq data via supervised mutual nearest neighbor detection Y Yang, G Li, H Qian, K Wilhelmsen, Y Shen, Y Li Briefings in Bioinformatics, bbaa097, 2020 | 23 | 2020 |
Parallel Characterization of cis-Regulatory Elements for Multiple Genes Using CRISPRpath X Ren, M Wang, B Li, K Jamieson, L Zheng, IR Jones, B Li, MA Takagi, ... Science Advances 7 (38), eabi4360, 2021 | 20 | 2021 |
Identification of potentially functional circRNAs and prediction of circRNA‐miRNA‐mRNA regulatory network in periodontitis: Bridging the gap between bioinformatics and clinical … W Yu, Q Gu, D Wu, W Zhang, G Li, L Lin, JM Lowe, S Hu, TW Li, Z Zhou, ... Journal of Periodontal Research, 2022 | 11 | 2022 |
Dropout imputation and batch effect correction for single-cell RNA sequencing data G Li, Y Yang, E Van Buren, Y Li Journal of Bio-X Research 2 (04), 169-177, 2019 | 10 | 2019 |
iSMNN: Batch Effect Correction for Single-cell RNA-seq data via Iterative Supervised Mutual Nearest Neighbor Refinement Y Yang, G Li, Y Xie, L Wang, Y Yang, J Liu, L Qian, Y Li Briefings in Bioinformatics, bbab122, 2021 | 8 | 2021 |
Redox-active endosomes mediate α5β1 integrin signaling and promote chondrocyte matrix metalloproteinase production in osteoarthritis MZ Miao, QP Su, Y Cui, EM Bahnson, G Li, M Wang, Y Yang, JA Collins, ... Science Signaling 16 (809), eadf8299, 2023 | 4 | 2023 |
DeepGWAS: Enhance GWAS Signals for Neuropsychiatric Disorders via Deep Neural Network Y Li, J Wen, G Li, J Chen, Q Sun, W Liu, W Guan, B Lai, J Szatkiewicz, ... Research Square, 2023 | 4 | 2023 |
A systematic evaluation of Hi-C data enhancement methods for enhancing PLAC-seq and HiChIP data L Huang, Y Yang, G Li, M Jiang, J Wen, A Abnousi, JD Rosen, M Hu, Y Li Briefings in Bioinformatics 23 (3), bbac145, 2022 | 4 | 2022 |
CUE: CpG impUtation ensemble for DNA methylation levels across the human methylation450 (HM450) and EPIC (HM850) BeadChip platforms G Li, L Raffield, M Logue, MW Miller, HP Santos Jr, TM O’Shea, RC Fry, ... Epigenetics 16 (8), 851-861, 2021 | 4 | 2021 |
Machine learning and deep learning in genetics and genomics D Wu, DS Karhade, M Pillai, MZ Jiang, L Huang, G Li, H Cho, J Roach, ... Machine Learning in Dentistry, 163-181, 2021 | 4 | 2021 |
ExpressHeart: Web Portal to Visualize Transcriptome Profiles of Non-Cardiomyocyte Cells G Li, C Luan, Y Dong, Y Xie, SC Zentz, R Zelt, J Roach, J Liu, L Qian, Y Li, ... International Journal of Molecular Sciences 22 (16), 8943, 2021 | 3 | 2021 |
Deep fiducial inference G Li, J Hannig Stat, e308, 2020 | 3 | 2020 |
Single-Cell Transcriptomic Analysis of Dental Pulp and Periodontal Ligament Stem Cells Y Yang, T Alves, MZ Miao, YC Wu, G Li, J Lou, H Hasturk, TE Van Dyke, ... Journal of Dental Research 103 (1), 71-80, 2024 | 1 | 2024 |
LSMMD-MA: Scaling multimodal data integration for single-cell genomics data analysis L Meng-Papaxanthos, R Zhang, G Li, M Cuturi, WS Noble, JP Vert Bioinformatics, 2023 | 1 | 2023 |
DNA Methylation Imputation Across Platforms G Li, G Zhang, Y Li Epigenome-Wide Association Studies: Methods and Protocols, 137-151, 2022 | 1 | 2022 |
Multi-condition and multi-modal temporal profile inference during mouse embryonic development R Zhang, C Qiu, G Filippova, G Li, J Shendure, JP Vert, X Deng, ... bioRxiv, 2024 | | 2024 |
Interstitial Fluid Shear Stress Induces the Synthetic Phenotype Switching of VSMCs to Release Pro-calcified Extracellular Vesicles via EGFR-MAPK-KLF5 Pathway W Gao, K Gu, L Ma, F Yang, L Deng, Y Zhang, MZ Miao, W Li, G Li, ... International Journal of Biological Sciences 20 (7), 2727, 2024 | | 2024 |
Pseudotime analysis for time-series single-cell sequencing and imaging data G Li, HJ Kim, S Pendyala, R Zhang, CM Disteche, JP Vert, X Deng, ... bioRxiv, 2023.11. 03.565575, 2023 | | 2023 |
Enhancing Hi-C contact matrices for loop detection with Capricorn, a multi-view diffusion model T Fang, Y Liu, A Woicik, M Lu, A Jha, X Wang, G Li, B Hristov, Z Liu, H Xu, ... | | 2023 |
Coupling Machine Learning with Fiducial Inference, Genetics and Epigenetics G Li The University of North Carolina at Chapel Hill, 2021 | | 2021 |