CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site M Kurcinski, M Jamroz, M Blaszczyk, A Kolinski, S Kmiecik Nucleic acids research 43 (W1), W419-W424, 2015 | 382 | 2015 |
CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures A Kuriata, AM Gierut, T Oleniecki, MP Ciemny, A Kolinski, M Kurcinski, ... Nucleic acids research 46 (W1), W338-W343, 2018 | 328 | 2018 |
Protein–peptide docking: opportunities and challenges M Ciemny, M Kurcinski, K Kamel, A Kolinski, N Alam, O Schueler-Furman, ... Drug discovery today 23 (8), 1530-1537, 2018 | 277 | 2018 |
Modeling of protein–peptide interactions using the CABS-dock web server for binding site search and flexible docking M Blaszczyk, M Kurcinski, M Kouza, L Wieteska, A Debinski, A Kolinski, ... Methods 93, 72-83, 2016 | 172 | 2016 |
Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubility A Kuriata, V Iglesias, J Pujols, M Kurcinski, S Kmiecik, S Ventura Nucleic acids research 47 (W1), W300-W307, 2019 | 114 | 2019 |
CABS-flex standalone: a simulation environment for fast modeling of protein flexibility M Kurcinski, T Oleniecki, MP Ciemny, A Kuriata, A Kolinski, S Kmiecik Bioinformatics 35 (4), 694-695, 2019 | 86 | 2019 |
Flexible docking of peptides to proteins using CABS‐dock M Kurcinski, A Badaczewska‐Dawid, M Kolinski, A Kolinski, S Kmiecik Protein Science 29 (1), 211-222, 2020 | 60 | 2020 |
CABS-dock standalone: a toolbox for flexible protein–peptide docking M Kurcinski, M Pawel Ciemny, T Oleniecki, A Kuriata, ... Bioinformatics 35 (20), 4170-4172, 2019 | 59 | 2019 |
Human telomerase model shows the role of the TEN domain in advancing the double helix for the next polymerization step K Steczkiewicz, MT Zimmermann, M Kurcinski, BA Lewis, D Dobbs, ... Proceedings of the National Academy of Sciences 108 (23), 9443-9448, 2011 | 59 | 2011 |
Protein-peptide molecular docking with large-scale conformational changes: the p53-MDM2 interaction MP Ciemny, A Debinski, M Paczkowska, A Kolinski, M Kurcinski, ... Scientific reports 6 (1), 37532, 2016 | 51 | 2016 |
Mechanism of folding and binding of an intrinsically disordered protein as revealed by ab initio simulations M Kurcinski, A Kolinski, S Kmiecik Journal of Chemical Theory and Computation 10 (6), 2224-2231, 2014 | 50 | 2014 |
Highly flexible protein-peptide docking using cabs-dock MP Ciemny, M Kurcinski, KJ Kozak, A Kolinski, S Kmiecik Modeling Peptide-Protein Interactions: Methods and Protocols, 69-94, 2017 | 42 | 2017 |
Protein–peptide docking using CABS-dock and contact information M Blaszczyk, MP Ciemny, A Kolinski, M Kurcinski, S Kmiecik Briefings in bioinformatics 20 (6), 2299-2305, 2019 | 39 | 2019 |
Denatured proteins and early folding intermediates simulated in a reduced conformational space S Kmiecik, M Kurcinski, A Rutkowska, D Gront, A Koliński Acta Biochimica Polonica 53, 2006 | 31 | 2006 |
Hierarchical modeling of protein interactions M Kurcinski, A Kolinski Journal of Molecular Modeling 13, 691-698, 2007 | 29 | 2007 |
Steps towards flexible docking: modeling of three-dimensional structures of the nuclear receptors bound with peptide ligands mimicking co-activators’ sequences M Kurcinski, A Kolinski The Journal of steroid biochemistry and molecular biology 103 (3-5), 357-360, 2007 | 28 | 2007 |
Aggrescan3D standalone package for structure-based prediction of protein aggregation properties A Kuriata, V Iglesias, M Kurcinski, S Ventura, S Kmiecik Bioinformatics 35 (19), 3834-3835, 2019 | 25 | 2019 |
Analysis and optimization of interactions between peptides mimicking the GD2 ganglioside and the monoclonal antibody 14G2a I HORWAcIK, M Kurciński, M Bzowska, AK KOWALcZYK, D Czaplicki, ... International journal of molecular medicine 28 (1), 47-57, 2011 | 19 | 2011 |
MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexes AE Badaczewska-Dawid, C Nithin, K Wroblewski, M Kurcinski, S Kmiecik Nucleic Acids Research 50 (W1), W474-W482, 2022 | 16 | 2022 |
Modeling EphB4-EphrinB2 protein–protein interaction using flexible docking of a short linear motif MP Ciemny, M Kurcinski, M Blaszczyk, A Kolinski, S Kmiecik BioMedical Engineering OnLine 16, 1-9, 2017 | 15 | 2017 |