HiCUP: pipeline for mapping and processing Hi-C data S Wingett, P Ewels, M Furlan-Magaril, T Nagano, S Schoenfelder, ... F1000Research 4, 2015 | 470 | 2015 |
The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements S Schoenfelder, M Furlan-Magaril, B Mifsud, F Tavares-Cadete, R Sugar, ... Genome research 25 (4), 582-597, 2015 | 437 | 2015 |
Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome S Schoenfelder, R Sugar, A Dimond, BM Javierre, H Armstrong, B Mifsud, ... Nature genetics 47 (10), 1179-1186, 2015 | 345 | 2015 |
Global reorganization of the nuclear landscape in senescent cells T Chandra, PA Ewels, S Schoenfelder, M Furlan-Magaril, SW Wingett, ... Cell reports 10 (4), 471-483, 2015 | 288 | 2015 |
Lineage-specific dynamic and pre-established enhancer–promoter contacts cooperate in terminal differentiation AJ Rubin, BC Barajas, M Furlan-Magaril, V Lopez-Pajares, MR Mumbach, ... Nature genetics 49 (10), 1522-1528, 2017 | 257 | 2017 |
RNA interactions are essential for CTCF-mediated genome organization R Saldaña-Meyer, J Rodriguez-Hernaez, T Escobar, M Nishana, ... Molecular cell 76 (3), 412-422. e5, 2019 | 165 | 2019 |
Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells P Freire-Pritchett, S Schoenfelder, C Varnai, SW Wingett, J Cairns, ... Elife 6, e21926, 2017 | 141 | 2017 |
Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes D Martin, C Pantoja, AF Miñán, C Valdes-Quezada, E Moltó, F Matesanz, ... Nature structural & molecular biology 18 (6), 708-714, 2011 | 121 | 2011 |
Sequential chromatin immunoprecipitation protocol: ChIP-reChIP M Furlan-Magaril, H Rincón-Arano, F Recillas-Targa DNA-Protein Interactions: Principles and Protocols, Third Edition, 253-266, 2009 | 108 | 2009 |
Long-range enhancer interactions are prevalent in mouse embryonic stem cells and are reorganized upon pluripotent state transition CL Novo, BM Javierre, J Cairns, A Segonds-Pichon, SW Wingett, ... Cell reports 22 (10), 2615-2627, 2018 | 97 | 2018 |
Promoter capture Hi-C: high-resolution, genome-wide profiling of promoter interactions S Schoenfelder, BM Javierre, M Furlan-Magaril, SW Wingett, P Fraser JoVE (Journal of Visualized Experiments), e57320, 2018 | 93 | 2018 |
Neural stem cells in development and regenerative medicine JM Baizabal, M Furlan-Magaril, J Santa-Olalla, L Covarrubias Archives of medical research 34 (6), 572-588, 2003 | 74 | 2003 |
Heterochromatin as an important driver of genome organization A Penagos-Puig, M Furlan-Magaril Frontiers in cell and developmental biology 8, 579137, 2020 | 52 | 2020 |
Protection against telomeric position effects by the chicken cHS4 β-globin insulator H Rincón-Arano, M Furlan-Magaril, F Recillas-Targa Proceedings of the National Academy of Sciences 104 (35), 14044-14049, 2007 | 43 | 2007 |
Gain of DNA methylation is enhanced in the absence of CTCF at the human retinoblastoma gene promoter M Dávalos-Salas, M Furlan-Magaril, E González-Buendía, ... BMC cancer 11 (1), 1-11, 2011 | 40 | 2011 |
3D genome architecture from populations to single cells M Furlan-Magaril, C Varnai, T Nagano, P Fraser Current opinion in genetics & development 31, 36-41, 2015 | 36 | 2015 |
An insulator embedded in the chicken α-globin locus regulates chromatin domain configuration and differential gene expression M Furlan-Magaril, E Rebollar, G Guerrero, A Fernandez, E Molto, ... Nucleic acids research 39 (1), 89-103, 2011 | 36 | 2011 |
In situ dissection of domain boundaries affect genome topology and gene transcription in Drosophila RG Arzate-Mejía, A Josué Cerecedo-Castillo, G Guerrero, ... Nature communications 11 (1), 894, 2020 | 27 | 2020 |
RNA proximity sequencing reveals the spatial organization of the transcriptome in the nucleus J Morf, SW Wingett, I Farabella, J Cairns, M Furlan-Magaril, ... Nature biotechnology 37 (7), 793-802, 2019 | 26 | 2019 |
Sox9 represses α-sarcoglycan gene expression in early myogenic differentiation JM Hernández-Hernández, P Delgado-Olguín, V Aguillón-Huerta, ... Journal of molecular biology 394 (1), 1-14, 2009 | 21 | 2009 |