Combinatorial optimization of mRNA structure, stability, and translation for RNA-based therapeutics K Leppek, GW Byeon, W Kladwang, HK Wayment-Steele, CH Kerr, AF Xu, ... Nature communications 13 (1), 1536, 2022 | 159 | 2022 |
Theoretical basis for stabilizing messenger RNA through secondary structure design HK Wayment-Steele, DS Kim, CA Choe, JJ Nicol, R Wellington-Oguri, ... Nucleic acids research 49 (18), 10604-10617, 2021 | 109 | 2021 |
Expanding the limits of the second genetic code with ribozymes J Lee, KE Schwieter, AM Watkins, DS Kim, H Yu, KJ Schwarz, J Lim, ... Nature communications 10 (1), 1-12, 2019 | 88 | 2019 |
Ribosome-mediated polymerization of long chain carbon and cyclic amino acids into peptides in vitro J Lee, KJ Schwarz, DS Kim, JS Moore, MC Jewett Nature Communications 11 (1), 1-8, 2020 | 78 | 2020 |
Evaluating the influence of selection markers on obtaining selected pools and stable cell lines in human cells AM Lanza, DS Kim, HS Alper Biotechnology journal 8 (7), 811-821, 2013 | 69 | 2013 |
In vitro ribosome synthesis and evolution through ribosome display MJ Hammerling, BR Fritz, DJ Yoesep, DS Kim, ED Carlson, MC Jewett Nature Communications 11 (1), 1-10, 2020 | 68 | 2020 |
Engineered ribosomes with tethered subunits for expanding biological function ED Carlson, AE d’Aquino, DS Kim, EM Fulk, K Hoang, T Szal, AS Mankin, ... Nature communications 10 (1), 1-13, 2019 | 63 | 2019 |
Engineered ribosomes for basic science and synthetic biology AE d'Aquino, DS Kim, MC Jewett Annual review of chemical and biomolecular engineering, 2018 | 52 | 2018 |
Ribosomal incorporation of cyclic β-amino acids into peptides using in vitro translation J Lee, R Torres, DS Kim, M Byrom, A Ellington, M Jewett Chemical Communications, 2020 | 36 | 2020 |
Repurposing ribosomes for synthetic biology Y Liu, DS Kim, MC Jewett Current opinion in chemical biology 40, 87-94, 2017 | 29 | 2017 |
Identifying and retargeting transcriptional hot spots in the human genome JK Cheng, AM Lewis, DS Kim, T Dyess, HS Alper Biotechnology Journal 11 (8), 1100-1109, 2016 | 27 | 2016 |
Deep learning models for predicting RNA degradation via dual crowdsourcing HK Wayment-Steele, W Kladwang, AM Watkins, DS Kim, B Tunguz, ... Nature Machine Intelligence 4 (12), 1174-1184, 2022 | 25 | 2022 |
Three-dimensional structure-guided evolution of a ribosome with tethered subunits DS Kim, A Watkins, E Bidstrup, J Lee, V Topkar, C Kofman, KJ Schwarz, ... Nature chemical biology 18 (9), 990-998, 2022 | 13 | 2022 |
Computationally-guided design and selection of high performing ribosomal active site mutants C Kofman, AM Watkins, DS Kim, JA Willi, AC Wooldredge, AS Karim, ... Nucleic acids research 50 (22), 13143-13154, 2022 | 8 | 2022 |
Eterna Participants and R HK Wayment-Steele, W Kladwang, AM Watkins, DS Kim, B Tunguz, ... Das, Nat. Mach. Intell 4, 1174-1184, 2022 | 6 | 2022 |
Theoretical basis for stabilizing messenger RNA through secondary structure design. bioRxiv Prepr. Serv. Biol. 2020.08. 22.262931 HK Wayment-Steele, DS Kim, CA Choe, JJ Nicol, R Wellington-Oguri, ... | 5 | 2020 |
Theoretical basis for stabilizing messenger RNA through secondary structure design. bioRxiv 2021 HK Wayment-Steele, DS Kim, CA Choe, JJ Nicol, R Wellington-Oguri, ... preprint, 0 | 5 | |
Computationally-guided design and selection of ribosomal active site mutants with high activity C Kofman, AM Watkins, DS Kim, AC Wooldredge, AS Karim, R Das, ... bioRxiv, 2022.06. 02.493746, 2022 | 3 | 2022 |
Correction to ‘Theoretical basis for stabilizing messenger RNA through secondary structure design’ HK Wayment-Steele, DS Kim, CA Choe, JJ Nicol, R Wellington-Oguri, ... Nucleic Acids Research 49 (19), 11405-11405, 2021 | 2 | 2021 |
Predictive models of RNA degradation through dual crowdsourcing HK Wayment-Steele, W Kladwang, AM Watkins, DS Kim, B Tunguz, ... | 1 | 2021 |