| SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data M Yu, A Abnousi, Y Zhang, G Li, L Lee, Z Chen, R Fang, TM Lagler, ... Nature methods 18 (9), 1056-1059, 2021 | 56 | 2021 |
| Parallel characterization of cis-regulatory elements for multiple genes using CRISPRpath X Ren, M Wang, B Li, K Jamieson, L Zheng, IR Jones, B Li, MA Takagi, ... Science advances 7 (38), eabi4360, 2021 | 22 | 2021 |
| The spatial-matched-filter beam pattern of a biaxial non-orthogonal velocity sensor CH Lee, HRL Lee, KT Wong, M Razo Journal of Sound and Vibration 367, 250-255, 2016 | 22 | 2016 |
| Nuclear condensates of YAP fusion proteins alter transcription to drive ependymoma tumourigenesis X Hu, X Wu, K Berry, C Zhao, D Xin, S Ogurek, X Liu, L Zhang, Z Luo, ... Nature Cell Biology 25 (2), 323-336, 2023 | 19 | 2023 |
| SnapHiC2: A computationally efficient loop caller for single cell Hi-C data X Li, L Lee, A Abnousi, M Yu, W Liu, L Huang, Y Li, M Hu Computational and structural biotechnology journal 20, 2778-2783, 2022 | 12 | 2022 |
| Enhancer-instructed epigenetic landscape and chromatin compartmentalization dictate a primary antibody repertoire protective against specific bacterial pathogens EM Barajas-Mora, L Lee, H Lu, JA Valderrama, E Bjanes, V Nizet, ... Nature immunology 24 (2), 320-336, 2023 | 11 | 2023 |
| Modelling policing strategies for departments with limited resources A Camacho, HRL Lee, LM Smith European journal of applied mathematics 27 (3), 479-501, 2016 | 10 | 2016 |
| Speed modulated social influence in evacuating pedestrian crowds HRL Lee, A Bhatia, J Brynjarsdóttir, N Abaid, A Barbaro, S Butail Collective Dynamics 5, 1-24, 2020 | 7 | 2020 |
| Snaphic: a computational pipeline to map chromatin contacts from single cell hi-c data M Yu, A Abnousi, Y Zhang, G Li, L Lee, Z Chen, R Fang, J Wen, Q Sun, ... BioRxiv, 2020.12. 13.422543, 2020 | 6 | 2020 |
| Small-molecule-induced epigenetic rejuvenation promotes SREBP condensation and overcomes barriers to CNS myelin regeneration X Liu, DE Xin, X Zhong, C Zhao, Z Li, L Zhang, AJ Dourson, L Lee, ... Cell 187 (10), 2465-2484. e22, 2024 | 5 | 2024 |
| CRISPR–Cas9-based functional interrogation of unconventional translatome reveals human cancer dependency on cryptic non-canonical open reading frames C Zheng, Y Wei, P Zhang, K Lin, D He, H Teng, G Manyam, Z Zhang, ... Nature Structural & Molecular Biology 30 (12), 1878-1892, 2023 | 5 | 2023 |
| Nuclear morphology is shaped by loop-extrusion programs I Patta, M Zand, L Lee, S Mishra, A Bortnick, H Lu, A Prusty, S McArdle, ... Nature 627 (8002), 196-203, 2024 | 3 | 2024 |
| SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data L Lee, H Yu, BB Jia, A Jussila, C Zhu, J Chen, L Xie, A Hafner, S Mishra, ... Nature Communications 14 (1), 4873, 2023 | 3 | 2023 |
| HPTAD: A computational method to identify topologically associating domains from HiChIP and PLAC-seq datasets J Rosen, L Lee, A Abnousi, J Chen, J Wen, M Hu, Y Li Computational and Structural Biotechnology Journal 21, 931-939, 2023 | 2 | 2023 |
| Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues M Yu, NR Zemke, Z Chen, I Juric, R Hu, R Raviram, A Abnousi, R Fang, ... bioRxiv, 2022.04. 25.489471, 2022 | 2 | 2022 |
| SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single-cell Hi-C data L Lee, M Yu, X Li, C Zhu, Y Zhang, H Yu, Z Chen, S Mishra, B Ren, Y Li, ... Briefings in Bioinformatics 24 (5), bbad315, 2023 | 1 | 2023 |
| An integrated view of the structure and function of the human 4D nucleome 4D Nucleome Consortium, J Dekker, BA Oksuz, Y Zhang, Y Wang, ... bioRxiv, 2024.09. 17.613111, 2024 | | 2024 |
