Mapping the human genetic architecture of COVID-19 Writing group Writing group leaders Pathak Gita A. 6 Andrews Shea J. 7 Kanai ... Nature 600 (7889), 472-477, 2021 | 747 | 2021 |
Immune imprinting, breadth of variant recognition, and germinal center response in human SARS-CoV-2 infection and vaccination K Röltgen, SCA Nielsen, O Silva, SF Younes, M Zaslavsky, C Costales, ... Cell 185 (6), 1025-1040. e14, 2022 | 352 | 2022 |
Recompleting the Caenorhabditis elegans genome J Yoshimura, K Ichikawa, MJ Shoura, KL Artiles, I Gabdank, L Wahba, ... Genome research 29 (6), 1009-1022, 2019 | 120 | 2019 |
Intricate and Cell Type-Specific Populations of Endogenous Circular DNA (eccDNA) in Caenorhabditis elegans and Homo sapiens MJ Shoura, I Gabdank, L Hansen, J Merker, J Gotlib, SD Levene, AZ Fire G3: Genes, Genomes, Genetics 7 (10), 3295-3303, 2017 | 106 | 2017 |
Extrachromosomal DNA—relieving heredity constraints, accelerating tumour evolution C Bailey, MJ Shoura, PS Mischel, C Swanton Annals of Oncology 31 (7), 884-893, 2020 | 75 | 2020 |
Identification of a pangolin niche for a 2019-nCoV-like coronavirus through an extensive meta-metagenomic search L Wahba, N Jain, AZ Fire, MJ Shoura, KL Artiles, MJ McCoy, DE Jeong BioRxiv, 2020.02. 08.939660, 2020 | 54 | 2020 |
An extensive meta-metagenomic search identifies SARS-CoV-2-homologous sequences in pangolin lung viromes L Wahba, N Jain, AZ Fire, MJ Shoura, KL Artiles, MJ McCoy, DE Jeong MSphere 5 (3), 10.1128/msphere. 00160-20, 2020 | 49 | 2020 |
mRNA vaccination compared to infection elicits an IgG-predominant response with greater SARS-CoV-2 specificity and similar decrease in variant spike recognition K Röltgen, SCA Nielsen, PS Arunachalam, F Yang, RA Hoh, OF Wirz, ... MedRxiv, 2021 | 45 | 2021 |
The thermodynamics of DNA loop formation, from J to Z SD Levene, SM Giovan, A Hanke, MJ Shoura Biochemical Society Transactions 41 (2), 513-518, 2013 | 31 | 2013 |
Assemblies-of-putative-SARS-CoV2-spike-encoding-mRNA-sequences-for-vaccines-BNT-162b2-and-mRNA-1273 DE Jeong, M McCoy, K Artiles, O Ilbay, A Fire, K Nadeau, H Park, B Betts, ... GitHub, no. i, 0-3, 2021 | 27 | 2021 |
Measurements of DNA-loop formation via Cre-mediated recombination MJ Shoura, AA Vetcher, SM Giovan, F Bardai, A Bharadwaj, MR Kesinger, ... Nucleic acids research 40 (15), 7452-7464, 2012 | 27 | 2012 |
Contribution of fluorophore dynamics and solvation to resonant energy transfer in protein-DNA complexes: a molecular-dynamics study MJ Shoura, RJKU Ranatunga, SA Harris, SO Nielsen, SD Levene Biophysical journal 107 (3), 700-710, 2014 | 18 | 2014 |
Discrete and topological models in molecular biology N Jonoska, M Saito Springer Science & Business Media, 2013 | 15 | 2013 |
High-throughput SARS-CoV-2 and host genome sequencing from single nasopharyngeal swabs JE Gorzynski, HN De Jong, D Amar, C Hughes, A Ioannidis, R Bierman, ... medRxiv, 2020.07. 27.20163147, 2020 | 13 | 2020 |
Deconvolution of nucleic-acid length distributions: a gel electrophoresis analysis tool and applications R Ziraldo, MJ Shoura, AZ Fire, SD Levene Nucleic Acids Research 47 (16), e92-e92, 2019 | 12 | 2019 |
Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy VN Parikh, AG Ioannidis, D Jimenez-Morales, JE Gorzynski, HN De Jong, ... Nature communications 13 (1), 5107, 2022 | 7 | 2022 |
Securing the future of research computing in the biosciences J Leng, M Shoura, TCB McLeish, AN Real, M Hardey, J McCafferty, ... PLoS computational biology 15 (5), e1006958, 2019 | 5 | 2019 |
Loop-closure kinetics reveal a stable, right-handed DNA intermediate in Cre recombination MJ Shoura, SM Giovan, AA Vetcher, R Ziraldo, A Hanke, SD Levene Nucleic Acids Research 48 (8), 4371-4381, 2020 | 4 | 2020 |
Understanding DNA looping through Cre-recombination kinetics MJ Shoura, SD Levene Discrete and Topological Models in Molecular Biology, 405-418, 2013 | 4 | 2013 |
Context-dependent DNA polymerization effects can masquerade as DNA modification signals Y Takahashi, M Shoura, A Fire, S Morishita BMC genomics 23 (1), 249, 2022 | 2 | 2022 |