| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 16764 | 2012 |
| Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007 | 6040 | 2007 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS biology 9 (4), e1001046, 2011 | 853 | 2011 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ... PLoS biology 9 (4), 2011 | 675 | 2011 |
| Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation S Shivaswamy, A Bhinge, Y Zhao, S Jones, M Hirst, VR Iyer PLoS biology 6 (3), e65, 2008 | 511 | 2008 |
| Wide-ranging functions of E2F4 in transcriptional activation and repression revealed by genome-wide analysis BK Lee, AA Bhinge, VR Iyer Nucleic acids research 39 (9), 3558-3573, 2011 | 167 | 2011 |
| Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells BK Lee, AA Bhinge, A Battenhouse, RM McDaniell, Z Liu, L Song, Y Ni, ... Genome research 22 (1), 9-24, 2012 | 149 | 2012 |
| Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment J Kim, AA Bhinge, XC Morgan, VR Iyer Nature Methods 2 (1), 47-53, 2005 | 145 | 2005 |
| Genetic correction of SOD1 mutant iPSCs reveals ERK and JNK activated AP1 as a driver of neurodegeneration in amyotrophic lateral sclerosis A Bhinge, SC Namboori, X Zhang, AMJ VanDongen, LW Stanton Stem cell reports 8 (4), 856-869, 2017 | 126 | 2017 |
| Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE) AA Bhinge, J Kim, GM Euskirchen, M Snyder, VR Iyer Genome research 17 (6), 910-916, 2007 | 94 | 2007 |
| NeuO: a fluorescent chemical probe for live neuron labeling JC Er, C Leong, CL Teoh, Q Yuan, P Merchant, M Dunn, D Sulzer, ... Angewandte Chemie International Edition 54 (8), 2442-2446, 2015 | 83 | 2015 |
| MiR-375 is essential for human spinal motor neuron development and may be involved in motor neuron degeneration A Bhinge, SC Namboori, A Bithell, C Soldati, NJ Buckley, LW Stanton Stem Cells 34 (1), 124-134, 2016 | 76 | 2016 |
| Mi R‐135b is a direct PAX 6 target and specifies human neuroectoderm by inhibiting TGF‐β/BMP signaling A Bhinge, J Poschmann, SC Namboori, X Tian, S Jia Hui Loh, A Traczyk, ... The EMBO journal 33 (11), 1271-1283, 2014 | 71 | 2014 |
| A procedure for detection and quantitation of cavity volumes in proteins: application to measure the strength of the hydrophobic driving force in protein folding S Chakravarty, A Bhinge, R Varadarajan Journal of Biological Chemistry 277 (35), 31345-31353, 2002 | 68 | 2002 |
| A Myc–microRNA network promotes exit from quiescence by suppressing the interferon response and cell-cycle arrest genes D Polioudakis, AA Bhinge, PJ Killion, BK Lee, NS Abell, VR Iyer Nucleic acids research 41 (4), 2239-2254, 2013 | 57 | 2013 |
| Lysine: Is it worth more? D Datta, A Bhinge, V Chandran Cytotechnology 36, 3-32, 2001 | 46 | 2001 |
| Single-cell gene expression analysis reveals regulators of distinct cell subpopulations among developing human neurons J Wang, P Jenjaroenpun, A Bhinge, VE Angarica, A Del Sol, I Nookaew, ... Genome research 27 (11), 1783-1794, 2017 | 43 | 2017 |
| Accurate detection of protein: ligand binding sites using molecular dynamics simulations A Bhinge, P Chakrabarti, K Uthanumallian, K Bajaj, K Chakraborty, ... Structure 12 (11), 1989-1999, 2004 | 43 | 2004 |
| Epigenetics of human T cells during the G0→ G1 transition AE Smith, C Chronis, M Christodoulakis, SJ Orr, NC Lea, NA Twine, ... Genome research 19 (8), 1325-1337, 2009 | 31 | 2009 |
| Cyclin-dependent kinase-dependent phosphorylation of Sox2 at serine 39 regulates neurogenesis S Lim, A Bhinge, SB Alonso, I Aksoy, J Aprea, CF Cheok, F Calegari, ... Molecular and Cellular Biology, 2017 | 29 | 2017 |
