Assessment of computational methods for the analysis of single-cell ATAC-seq data H Chen, C Lareau, T Andreani, ME Vinyard, SP Garcia, K Clement, ... Genome biology 20, 1-25, 2019 | 264 | 2019 |
CRISPR-suppressor scanning reveals a nonenzymatic role of LSD1 in AML ME Vinyard, C Su, AP Siegenfeld, AL Waterbury, AM Freedy, PM Gosavi, ... Nature chemical biology 15 (5), 529-539, 2019 | 96 | 2019 |
SIMBA: single-cell embedding along with features H Chen, J Ryu, ME Vinyard, A Lerer, L Pinello Nature Methods 21 (6), 1003-1013, 2024 | 25 | 2024 |
singlecellVR: interactive visualization of single-cell data in virtual reality DF Stein, H Chen, ME Vinyard, Q Qin, RD Combs, Q Zhang, L Pinello Frontiers in genetics 12, 764170, 2021 | 16 | 2021 |
Current progress and potential opportunities to infer single-cell developmental trajectory and cell fate L Wang, Q Zhang, Q Qin, N Trasanidis, ME Vinyard, H Chen, L Pinello Current Opinion in Systems Biology 26, 1-11, 2021 | 10 | 2021 |
Integrative dissection of gene regulatory elements at base resolution Z Chen, N Javed, M Moore, J Wu, G Sun, M Vinyard, A Collins, L Pinello, ... Cell Genomics 3 (6), 2023 | 9 | 2023 |
A molecular glue approach to control the half-life of CRISPR-based technologies V Sreekanth, M Jan, KT Zhao, D Lim, JR Davis, M McConkey, V Kovalcik, ... bioRxiv, 2023 | 3 | 2023 |
Single-cell RNA sequencing of rare circulating tumor cells in precursor myeloma patients reveals molecular underpinnings of tumor cell circulation ED Lightbody, DT Firer, R Sklavenitis-Pistofidis, J Tsuji, MP Agius, ... Blood 140 (Supplement 1), 602-603, 2022 | 1 | 2022 |
An autoinhibitory switch of the LSD1 disordered region controls enhancer silencing AL Waterbury, HS Kwok, C Lee, DN Narducci, AM Freedy, C Su, S Raval, ... Molecular Cell, 2024 | | 2024 |
Engineering computational single-cell and CRISPR-based functional genomics tools to study dynamic gene regulation in hematopoietic development and disease ME Vinyard | | 2024 |
Defining and benchmarking open problems in single-cell analysis MD Luecken, S Gigante, DB Burkhardt, R Cannoodt, DC Strobl, ... Research Square, 2024 | | 2024 |
Differentiation of Acute Myeloid Leukemia Cells upon Pharmacological Inhibition of LSD1 Requires Its N-Terminal Intrinsically Disordered Region HS Kwok, A Waterbury, C Lee, D Narducci, A Freedy, C Su, A Reiter, ... Blood 142, 1416, 2023 | | 2023 |
Single-Cell RNA Sequencing of Circulating Tumor Cells in Precursor Myeloma Patients Reveals Mechanisms of Disease Dissemination ED Lightbody, R Sklavenitis-Pistofidis, DT Firer, J Tsuji, MP Agius, ... Blood 142, 872, 2023 | | 2023 |
Modeling single-cell dynamics using stochastic generative models based on neural differential equations ME Vinyard, AW Rasmussen, R Li, L Pinello, G Getz Cancer Research 83 (7_Supplement), 5371-5371, 2023 | | 2023 |
scDiffEq: drift-diffusion modeling of single-cell dynamics with neural stochastic differential equations ME Vinyard, A Rasmussen, R Li, G Getz, L Pinello bioRxiv, 2023.12. 06.570508, 2023 | | 2023 |
In Situ Characterization of Chromatin Landscape in Progression of Smoldering Precursor Stage to Multiple Myeloma M Rahmat, M Vinyard, R Sklavenitis-Pistofidis, K Clement, ED Lightbody, ... Blood 140 (Supplement 1), 4222-4223, 2022 | | 2022 |
SIMBA: SIngle-cell eMBedding Along with features L Pinello, H Chen, J Ryu, ME Vinyard, A Lerer | | 2022 |