CUT&Tag2for1: a modified method for simultaneous profiling of the accessible and silenced regulome in single cells DH Janssens, DJ Otto, MP Meers, M Setty, K Ahmad, S Henikoff Genome biology 23 (1), 81, 2022 | 38 | 2022 |
ProstaTrend—a multivariable prognostic RNA expression score for aggressive prostate cancer M Kreuz, DJ Otto, S Fuessel, C Blumert, C Bertram, S Bartsch, D Loeffler, ... European Urology 78 (3), 452-459, 2020 | 19 | 2020 |
Characterization and evaluation of gene fusions as a measure of genetic instability and disease prognosis in prostate cancer C Schimmelpfennig, M Rade, S Füssel, D Löffler, C Blumert, C Bertram, ... BMC cancer 23 (1), 575, 2023 | 2 | 2023 |
A reliable transcriptomic risk-score applicable to formalin-fixed paraffin-embedded biopsies improves outcome prediction in localized prostate cancer M Rade, M Kreuz, A Borkowetz, U Sommer, C Blumert, S Füssel, ... Molecular Medicine 30 (1), 19, 2024 | 1 | 2024 |
Quantifying Cell-State Densities in Single-Cell Phenotypic Landscapes using Mellon D Otto, C Jordan, B Dury, C Dien, M Setty bioRxiv, 2023 | 1 | 2023 |
Simultaneous CUT&Tag profiling of the accessible and silenced regulome in single cells DH Janssens, DJ Otto, MP Meers, M Setty, K Ahmad, S Henikoff bioRxiv, 2021.12. 19.473377, 2021 | 1 | 2021 |
Computational Gene Expression Deconvolution D Otto | 1 | 2021 |
Multi-gene expression assay for prostate carcinoma K Reiche, C Blumert, F Horn, M Kreuz, D Otto, C Bertram, J Hackermüller, ... US Patent App. 17/920,109, 2023 | | 2023 |
KMT2A oncoproteins induce epigenetic resistance to targeted therapies DH Janssens, M Duran, DJ Otto, D Kirkey, JS Yi, S Meshinchi, JF Sarthy, ... bioRxiv, 2023.12. 29.573681, 2023 | | 2023 |
Continuous cell-state density inference and applications for single-cell data DJ Otto, M Setty, B Dury NeurIPS 2022 Workshop on Learning Meaningful Representations of Life, 2022 | | 2022 |
Histological grading of the prostate carcinoma using deep learning: an unsupervised approach (Erratum) M Bauer, S Zürner, M Kreuz, D Otto, G Popp, UD Braumann Medical Imaging 2021: Digital Pathology 11603, 333-333, 2021 | | 2021 |
Histological grading of the prostate carcinoma using deep learning: an unsupervised approach M Bauer, S Zürner, M Kreuz, D Otto, G Popp, UD Braumann Medical Imaging 2021: Digital Pathology 11603, 235-252, 2021 | | 2021 |