| Coarse-grained (multiscale) simulations in studies of biophysical and chemical systems SCL Kamerlin, S Vicatos, A Dryga, A Warshel Annual review of physical chemistry 62 (1), 41-64, 2011 | 243 | 2011 |
| Transfer of viral communities between human individuals during fecal microbiota transplantation C Chehoud, A Dryga, Y Hwang, D Nagy-Szakal, EB Hollister, RA Luna, ... MBio 7 (2), 10.1128/mbio. 00322-16, 2016 | 115 | 2016 |
| INSPIIRED: a pipeline for quantitative analysis of sites of new DNA integration in cellular genomes E Sherman, C Nobles, CC Berry, E Six, Y Wu, A Dryga, N Malani, F Male, ... Molecular Therapy-Methods & Clinical Development 4, 39-49, 2017 | 111 | 2017 |
| INSPIIRED: quantification and visualization tools for analyzing integration site distributions CC Berry, C Nobles, E Six, Y Wu, N Malani, E Sherman, A Dryga, ... Molecular Therapy Methods & Clinical Development 4, 17-26, 2017 | 74 | 2017 |
| Simulating electrostatic energies in proteins: Perspectives and some recent studies of pKas, redox, and other crucial functional properties A Warshel, A Dryga Proteins: Structure, Function, and Bioinformatics 79 (12), 3469-3484, 2011 | 56 | 2011 |
| Realistic simulation of the activation of voltage-gated ion channels A Dryga, S Chakrabarty, S Vicatos, A Warshel Proceedings of the National Academy of Sciences 109 (9), 3335-3340, 2012 | 35 | 2012 |
| Coarse grained model for exploring voltage dependent ion channels A Dryga, A Warshel Biophysical Journal 102 (3), 686a, 2012 | 34 | 2012 |
| Renormalizing SMD: The renormalization approach and its use in long time simulations and accelerated PMF calculations of macromolecules A Dryga, A Warshel The Journal of Physical Chemistry B 114 (39), 12720-12728, 2010 | 31 | 2010 |
| Exhaustive clustering of similar binding pockets formed by ligands and proteins found in 3D protein structures A Dryga, A Marchler-Bauer, CJ Lanczycki, E Bolton, LY Geer, SH Bryant ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 248, 2014 | | 2014 |
| Using assay information in PubChem to improve 2D similarity searching LY Geer, AY Dryga, L Han, SH Bryant, X Yu ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 248, 2014 | | 2014 |
| Bridging timescales: Long time simulations and accelerated PMF calculations A Dryga, A Warshel ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 243, 2012 | | 2012 |
| Capturing the complexity of ion channels: Simulations of long-time dynamics, conformational changes and the effect of the membrane potential A Dryga University of Southern California, 2012 | | 2012 |
| Ionic strength and electric field effects in protein-membrane systems A Dryga, A Warshel ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 242, 2011 | | 2011 |
| External Electric Field in the Atomistic Simulation of Membrane Systems A Dryga, A Warshel Biophysical Journal 100 (3), 333a, 2011 | | 2011 |
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