| The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse P Grote, L Wittler, D Hendrix, F Koch, S Währisch, A Beisaw, K Macura, ... Developmental cell 24 (2), 206-214, 2013 | 1045 | 2013 |
| Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters F Koch, R Fenouil, M Gut, P Cauchy, TK Albert, J Zacarias-Cabeza, ... Nature structural & molecular biology 18 (8), 956-963, 2011 | 373 | 2011 |
| H3K4 tri‐methylation provides an epigenetic signature of active enhancers A Pekowska, T Benoukraf, J Zacarias‐Cabeza, M Belhocine, F Koch, ... The EMBO journal 30 (20), 4198-4210, 2011 | 365 | 2011 |
| Splicing enhances recruitment of methyltransferase HYPB/Setd2 and methylation of histone H3 Lys36 SF De Almeida, AR Grosso, F Koch, R Fenouil, S Carvalho, J Andrade, ... Nature structural & molecular biology 18 (9), 977-983, 2011 | 278 | 2011 |
| CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters R Fenouil, P Cauchy, F Koch, N Descostes, JZ Cabeza, C Innocenti, ... Genome research 22 (12), 2399-2408, 2012 | 262 | 2012 |
| Mouse embryonic stem cells self-organize into trunk-like structures with neural tube and somites JV Veenvliet, A Bolondi, H Kretzmer, L Haut, M Scholze-Wittler, D Schifferl, ... Science 370 (6522), eaba4937, 2020 | 234 | 2020 |
| Threonine‐4 of mammalian RNA polymerase II CTD is targeted by Polo‐like kinase 3 and required for transcriptional elongation C Hintermair, M Heidemann, F Koch, N Descostes, M Gut, I Gut, R Fenouil, ... The EMBO journal 31 (12), 2784-2797, 2012 | 183 | 2012 |
| Antagonistic activities of Sox2 and brachyury control the fate choice of neuro-mesodermal progenitors F Koch, M Scholze, L Wittler, D Schifferl, S Sudheer, P Grote, ... Developmental cell 42 (5), 514-526. e7, 2017 | 167 | 2017 |
| The Ccr4–NOT deadenylase subunits CNOT7 and CNOT8 have overlapping roles and modulate cell proliferation A Aslam, S Mittal, F Koch, JC Andrau, GS Winkler Molecular biology of the cell 20 (17), 3840-3850, 2009 | 135 | 2009 |
| Divergent transcription is associated with promoters of transcriptional regulators C Lepoivre, M Belhocine, A Bergon, A Griffon, M Yammine, L Vanhille, ... BMC genomics 14 (1), 1-20, 2013 | 121 | 2013 |
| Tyrosine phosphorylation of RNA polymerase II CTD is associated with antisense promoter transcription and active enhancers in mammalian cells N Descostes, M Heidemann, L Spinelli, R Schüller, MA Maqbool, ... Elife 3, e02105, 2014 | 110 | 2014 |
| Genome-wide RNA polymerase II: not genes only! F Koch, F Jourquin, P Ferrier, JC Andrau Trends in biochemical sciences 33 (6), 265-273, 2008 | 100 | 2008 |
| Dynamic recruitment of Ets1 to both nucleosome-occupied and-depleted enhancer regions mediates a transcriptional program switch during early T-cell differentiation P Cauchy, MA Maqbool, J Zacarias-Cabeza, L Vanhille, F Koch, ... Nucleic acids research 44 (8), 3567-3585, 2016 | 49 | 2016 |
| CoCAS: a ChIP-on-chip analysis suite T Benoukraf, P Cauchy, R Fenouil, A Jeanniard, F Koch, S Jaeger, ... Bioinformatics 25 (7), 954-955, 2009 | 49 | 2009 |
| Initiating RNA polymerase II and TIPs as hallmarks of enhancer activity and tissue-specificity F Koch, JC Andrau Transcription 2 (6), 263-268, 2011 | 44 | 2011 |
| BRACHYURY directs histone acetylation to target loci during mesoderm development A Beisaw, P Tsaytler, F Koch, SU Schmitz, MT Melissari, AD Senft, ... EMBO reports 19 (1), 118-134, 2018 | 30 | 2018 |
| Different concentrations of FGF ligands, FGF2 or FGF8 determine distinct states of WNT‐induced presomitic mesoderm S Sudheer, J Liu, M Marks, F Koch, A Anurin, M Scholze, AD Senft, ... Stem Cells 34 (7), 1790-1800, 2016 | 27 | 2016 |
| Pasha: a versatile R package for piling chromatin HTS data R Fenouil, N Descostes, L Spinelli, F Koch, MA Maqbool, T Benoukraf, ... Bioinformatics 32 (16), 2528-2530, 2016 | 20 | 2016 |
| Alternative enhancer usage and targeted polycomb marking hallmark promoter choice during T cell differentiation MA Maqbool, L Pioger, AZ El Aabidine, N Karasu, AM Molitor, LTM Dao, ... Cell Reports 32 (7), 2020 | 17 | 2020 |
| Transcription-dependent generation of a specialized chromatin structure at the TCRβ locus J Zacarias-Cabeza, M Belhocine, L Vanhille, P Cauchy, F Koch, ... The Journal of Immunology 194 (7), 3432-3443, 2015 | 13 | 2015 |
