The SUPERFAMILY 1.75 database in 2014: a doubling of data ME Oates, J Stahlhacke, DV Vavoulis, B Smithers, OJL Rackham, ... Nucleic acids research 43 (D1), D227-D233, 2015 | 86 | 2015 |
An optimized quantitative proteomics method establishes the cell type‐resolved mouse brain secretome J Tüshaus, SA Müller, ES Kataka, J Zaucha, L Sebastian Monasor, M Su, ... The EMBO journal 39 (20), e105693, 2020 | 60 | 2020 |
Crystallographic analysis of Neisseria meningitidis PorB extracellular loops potentially implicated in TLR2 recognition C Kattner, DN Toussi, J Zaucha, LM Wetzler, N Rüppel, U Zachariae, ... Journal of structural biology 185 (3), 440-447, 2014 | 35 | 2014 |
Large expert-curated database for benchmarking document similarity detection in biomedical literature search P Brown, AC Tan, MA El-Esawi, T Liehr, O Blanck, DP Gladue, ... Database 2019, 2019 | 34 | 2019 |
Pred‐MutHTP: Prediction of disease‐causing and neutral mutations in human transmembrane proteins A Kulandaisamy, J Zaucha, R Sakthivel, D Frishman, M Michael Gromiha Human Mutation 41 (3), 581-590, 2020 | 24 | 2020 |
Mutations in transmembrane proteins: diseases, evolutionary insights, prediction and comparison with globular proteins J Zaucha, M Heinzinger, A Kulandaisamy, E Kataka, ÓL Salvádor, ... Briefings in Bioinformatics 22 (3), bbaa132, 2021 | 20 | 2021 |
CerealsDB—new tools for the analysis of the wheat genome: update 2020 PA Wilkinson, AM Allen, S Tyrrell, LU Wingen, X Bian, MO Winfield, ... Database 2020, baaa060, 2020 | 18 | 2020 |
Matching phenotypes to whole genomes: Lessons learned from four iterations of the personal genome project community challenges B Cai, B Li, N Kiga, J Thusberg, T Bergquist, YC Chen, N Niknafs, ... Human Mutation, 2017 | 18 | 2017 |
MPTherm-pred: analysis and prediction of thermal stability changes upon mutations in transmembrane proteins A Kulandaisamy, J Zaucha, D Frishman, MM Gromiha Journal of Molecular Biology 433 (11), 166646, 2021 | 16 | 2021 |
Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI M Carraro, G Minervini, M Giollo, Y Bromberg, E Capriotti, R Casadio, ... Human mutation 38 (9), 1042-1050, 2017 | 15 | 2017 |
Identification of a cation transport pathway in Neisseria meningitidis PorB C Kattner, J Zaucha, F Jaenecke, U Zachariae, M Tanabe Proteins: Structure, Function, and Bioinformatics 81 (5), 830-840, 2013 | 15 | 2013 |
Family-specific analysis of variant pathogenicity prediction tools J Zaucha, M Heinzinger, S Tarnovskaya, B Rost, D Frishman NAR Genomics and Bioinformatics 2 (2), lqaa014, 2020 | 13 | 2020 |
Neuronal Differentiation of LUHMES Cells Induces Substantial Changes of the Proteome J Tüshaus, ES Kataka, J Zaucha, D Frishman, SA Müller, SF Lichtenthaler PROTEOMICS, 2000174, 2020 | 12 | 2020 |
CAGI SickKids challenges: Assessment of phenotype and variant predictions derived from clinical and genomic data of children with undiagnosed diseases L Kasak, JM Hunter, R Udani, C Bakolitsa, Z Hu, AN Adhikari, G Babbi, ... Human mutation 40 (9), 1373-1391, 2019 | 11 | 2019 |
Edgetic perturbation signatures represent known and novel cancer biomarkers E Kataka, J Zaucha, G Frishman, A Ruepp, D Frishman Scientific reports 10 (1), 4350, 2020 | 9 | 2020 |
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods Genome Biology 25 (1), 53, 2024 | 8 | 2024 |
Resurrecting the Dead (Molecules) J Zaucha, JG Heddle Computational and structural biotechnology journal 15, 351-358, 2017 | 8 | 2017 |
Deep learning model predicts water interaction sites on the surface of proteins using limited-resolution data J Zaucha, CA Softley, M Sattler, D Frishman, GM Popowicz Chemical Communications 56 (98), 15454-15457, 2020 | 6 | 2020 |
A Proteome Quality Index J Zaucha, J Stahlhacke, ME Oates, N Thurlby, OJL Rackham, H Fang, ... Environmental microbiology 17 (1), 4-9, 2015 | 5 | 2015 |
Detection of epistasis between ACTN3 and SNAP-25 with an insight towards gymnastic aptitude identification ŁA Płóciennik, J Zaucha, JM Zaucha, K Łukaszuk, M Jóźwicki, ... PloS one 15 (8), e0237808, 2020 | 4 | 2020 |