| Antigen-specific antibody design and optimization with diffusion-based generative models for protein structures S Luo*, Y Su*, X Peng, S Wang, J Peng, J Ma Advances in Neural Information Processing Systems 35, 9754-9767, 2022 | 147 | 2022 |
| ECNet is an evolutionary context-integrated deep learning framework for protein engineering Y Luo, G Jiang, T Yu, Y Liu, L Vo, H Ding, Y Su, WW Qian, H Zhao, J Peng Nature communications 12 (1), 5743, 2021 | 108 | 2021 |
| Deep learning guided optimization of human antibody against SARS-CoV-2 variants with broad neutralization S Shan, S Luo, Z Yang, J Hong, Y Su, F Ding, L Fu, C Li, P Chen, J Ma, ... Proceedings of the National Academy of Sciences 119 (11), e2122954119, 2022 | 89 | 2022 |
| 3d equivariant diffusion for target-aware molecule generation and affinity prediction J Guan, WW Qian, X Peng, Y Su, J Peng, J Ma arXiv preprint arXiv:2303.03543, 2023 | 87 | 2023 |
| Factorized q-learning for large-scale multi-agent systems M Zhou, Y Chen, Y Wen, Y Yang, Y Su, W Zhang, D Zhang, J Wang Proceedings of the first international conference on distributed artificial …, 2019 | 70 | 2019 |
| Equivariant point cloud analysis via learning orientations for message passing S Luo, J Li, J Guan, Y Su, C Cheng, J Peng, J Ma Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern …, 2022 | 26 | 2022 |
| Integrating thermodynamic and sequence contexts improves protein-RNA binding prediction Y Su, Y Luo, X Zhao, Y Liu, J Peng PLoS computational biology 15 (9), e1007283, 2019 | 25 | 2019 |
| Evolutionary context-integrated deep sequence modeling for protein engineering Y Luo, L Vo, H Ding, Y Su, Y Liu, WW Qian, H Zhao, J Peng Research in Computational Molecular Biology: 24th Annual International …, 2020 | 18 | 2020 |
| In vitro continuous protein evolution empowered by machine learning and automation T Yu, AG Boob, N Singh, Y Su, H Zhao Cell Systems 14 (8), 633-644, 2023 | 13 | 2023 |
| Mitigating Data Scarcity in Protein Binding Prediction Using Meta-Learning. Y Luo, J Ma, X Zhao, Y Su, Y Liu, T Ideker, J Peng RECOMB, 305-307, 2019 | 10 | 2019 |
| Chenpeng Su, Jian Peng, and Jianzhu Ma S Luo, Y Su, Z Wu Rotamer density estimator is an unsupervised learner of the effect of …, 2023 | 5 | 2023 |
| Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction S Luo*, Y Su*, Z Wu, C Su, J Peng, J Ma bioRxiv, 2023.02. 28.530137, 2023 | 4 | 2023 |
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