| Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing A Gnirke, A Melnikov, J Maguire, P Rogov, EM LeProust, W Brockman, ... Nature biotechnology 27 (2), 182-189, 2009 | 1753 | 2009 |
| Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes AL Sanborn, SSP Rao, SC Huang, NC Durand, MH Huntley, AI Jewett, ... Proceedings of the National Academy of Sciences 112 (47), E6456-E6465, 2015 | 1730 | 2015 |
| Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay A Melnikov, A Murugan, X Zhang, T Tesileanu, L Wang, P Rogov, S Feizi, ... Nature biotechnology 30 (3), 271-277, 2012 | 763 | 2012 |
| Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay P Kheradpour, J Ernst, A Melnikov, P Rogov, L Wang, X Zhang, J Alston, ... Genome research 23 (5), 800-811, 2013 | 360 | 2013 |
| Systematic functional dissection of common genetic variation affecting red blood cell traits JC Ulirsch, SK Nandakumar, L Wang, FC Giani, X Zhang, P Rogov, ... Cell 165 (6), 1530-1545, 2016 | 348 | 2016 |
| Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts JZ Levin, MF Berger, X Adiconis, P Rogov, A Melnikov, T Fennell, ... Genome biology 10, 1-8, 2009 | 228 | 2009 |
| Comprehensive mutational scanning of a kinase in vivo reveals substrate-dependent fitness landscapes A Melnikov, P Rogov, L Wang, A Gnirke, TS Mikkelsen Nucleic acids research 42 (14), e112-e112, 2014 | 211 | 2014 |
| Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts L Ma, Z Chen, DW Huang, G Kutty, M Ishihara, H Wang, A Abouelleil, ... Nature communications 7 (1), 10740, 2016 | 191 | 2016 |
| Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax DN Hupalo, Z Luo, A Melnikov, PL Sutton, P Rogov, A Escalante, ... Nature genetics 48 (8), 953-958, 2016 | 190 | 2016 |
| Systematic dissection of genomic features determining transcription factor binding and enhancer function SR Grossman, X Zhang, L Wang, J Engreitz, A Melnikov, P Rogov, ... Proceedings of the National Academy of Sciences 114 (7), E1291-E1300, 2017 | 186 | 2017 |
| Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions J Ernst, A Melnikov, X Zhang, L Wang, P Rogov, TS Mikkelsen, M Kellis Nature biotechnology 34 (11), 1180-1190, 2016 | 170 | 2016 |
| Longitudinal genomic surveillance of Plasmodium falciparum malaria parasites reveals complex genomic architecture of emerging artemisinin resistance GC Cerqueira, IH Cheeseman, SF Schaffner, S Nair, M McDew-White, ... Genome biology 18, 1-13, 2017 | 141 | 2017 |
| Hybrid selection for sequencing pathogen genomes from clinical samples A Melnikov, K Galinsky, P Rogov, T Fennell, D Van Tyne, C Russ, ... Genome biology 12, 1-9, 2011 | 121 | 2011 |
| Development of a Single Nucleotide Polymorphism Barcode to Genotype Plasmodium vivax Infections ML Baniecki, AL Faust, SF Schaffner, DJ Park, K Galinsky, RF Daniels, ... PLoS neglected tropical diseases 9 (3), e0003539, 2015 | 101 | 2015 |
| Targeted exon sequencing by in‐solution hybrid selection B Blumenstiel, K Cibulskis, S Fisher, M DeFelice, A Barry, T Fennell, ... Current Protocols in Human Genetics 66 (1), 18.4. 1-18.4. 24, 2010 | 95 | 2010 |
| Massively parallel reporter assays in cultured mammalian cells A Melnikov, X Zhang, P Rogov, L Wang, TS Mikkelsen JoVE (Journal of Visualized Experiments), e51719, 2014 | 74 | 2014 |
| Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice GP Donaldson, WC Chou, AL Manson, P Rogov, T Abeel, J Bochicchio, ... Nature microbiology 5 (5), 746-756, 2020 | 68 | 2020 |
| Random mutagenesis by recombinational capture of PCR products in Bacillus subtilis and Acinetobacter calcoaceticus A Melnikov, PJ Youngman Nucleic acids research 27 (4), 1056-1062, 1999 | 60 | 1999 |
| The Bacillus SpoIIGA protein is targeted to sites of spore septum formation in a SpoIIE‐independent manner P Fawcett, A Melnikov, P Youngman Molecular microbiology 28 (5), 931-943, 1998 | 44 | 1998 |
| Early Epstein-Barr virus genomic diversity and convergence toward the B95. 8 genome in primary infection ER Weiss, SL Lamers, JL Henderson, A Melnikov, M Somasundaran, ... Journal of virology 92 (2), 10.1128/jvi. 01466-17, 2018 | 36 | 2018 |
