Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction S Knyazev, V Tsyvina, A Shankar, A Melnyk, A Artyomenko, T Malygina, ... Nucleic acids research 49 (17), e102-e102, 2021 | 44 | 2021 |
Inference of genetic relatedness between viral quasispecies from sequencing data O Glebova, S Knyazev, A Melnyk, A Artyomenko, Y Khudyakov, ... BMC genomics 18, 81-88, 2017 | 30 | 2017 |
Cliquesnv: Scalable reconstruction of intra-host viral populations from ngs reads S Knyazev, V Tsyvina, A Melnyk, A Artyomenko, T Malygina, YB Porozov, ... BioRxiv, 264242, 2018 | 24 | 2018 |
From alpha to zeta: Identifying variants and subtypes of sars-cov-2 via clustering A Melnyk, F Mohebbi, S Knyazev, B Sahoo, R Hosseini, P Skums, ... Journal of Computational Biology 28 (11), 1113-1129, 2021 | 23 | 2021 |
Using earth mover’s distance for viral outbreak investigations A Melnyk, S Knyazev, F Vannberg, L Bunimovich, P Skums, A Zelikovsky BMC genomics 21, 1-9, 2020 | 17 | 2020 |
Clustering based identification of SARS-CoV-2 subtypes A Melnyk, F Mohebbi, S Knyazev, B Sahoo, R Hosseini, P Skums, ... International Conference on Computational Advances in Bio and Medical …, 2020 | 14 | 2020 |
CliqueSNV: an efficient noise reduction technique for accurate assembly of viral variants from NGS data S Knyazev, V Tsyvina, A Shankar, A Melnyk, A Artyomenko, T Malygina, ... bioRxiv 264242, 2020 | 11 | 2020 |
CliqueSNV: scalable reconstruction of intra‐host viral populations from NGS reads. bioRxiv 2018; 1‐8 S Knyazev, V Tsyvina, A Melnyk, T Malygina, YB Porozov, E Campbell | 5 | |