Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area JA Guerra-Assunção, AC Crampin, R Houben, T Mzembe, K Mallard, ... Elife 4, e05166, 2015 | 259 | 2015 |
Recurrence due to Relapse or Reinfection With Mycobacterium tuberculosis: A Whole-Genome Sequencing Approach in a Large, Population-Based Cohort With a … JA Guerra-Assunção, RMGJ Houben, AC Crampin, T Mzembe, K Mallard, ... The Journal of infectious diseases 211 (7), 1154-1163, 2015 | 198 | 2015 |
Bacterial community dynamics in a cooling tower with emphasis on pathogenic bacteria and Legionella species using universal and genus-specific deep sequencing RPA Pereira, J Peplies, MG Höfle, I Brettar Water research 122, 363-376, 2017 | 65 | 2017 |
Development of a genus-specific next generation sequencing approach for sensitive and quantitative determination of the Legionella microbiome in freshwater systems RPA Pereira, J Peplies, I Brettar, MG Höfle BMC microbiology 17 (1), 79, 2017 | 47 | 2017 |
Combination therapy for gonorrhoea: in vitro synergy testing R Pereira, MJ Cole, CA Ison Journal of Antimicrobial Chemotherapy 68 (3), 640-643, 2013 | 43 | 2013 |
Genotypes and antimicrobial-resistant phenotypes of Neisseria gonorrhoeae in Portugal (2004–2009) C Florindo, R Pereira, M Boura, B Nunes, A Paulino, JP Gomes, ... Sexually transmitted infections 86 (6), 449-453, 2010 | 38 | 2010 |
Boron Doped Diamond as a Low Biofouling Material in Aquatic Environments: Assessment of Pseudomonas aeruginosa Biofilm Formation LJ Simcox, RPA Pereira, EMH Wellington, JV Macpherson ACS Applied Materials & Interfaces 11 (28), 25024-25033, 2019 | 31 | 2019 |
Whole-Genome Enrichment Provides Deep Insights into Vibrio cholerae Metagenome from an African River L Vezzulli, C Grande, G Tassistro, I Brettar, MG Höfle, RPA Pereira, ... Microbial ecology 73, 734-738, 2017 | 31 | 2017 |
Comparison of SARS-CoV-2 N gene real-time RT-PCR targets and commercially available mastermixes JR Brown, DM O’Sullivan, D Shah, L Atkinson, RPA Pereira, AS Whale, ... Journal of virological methods, 114215, 2021 | 23 | 2021 |
Pseudomonas-specific NGS assay provides insight into abundance and dynamics of Pseudomonas species including P. aeruginosa in a cooling tower RPA Pereira, J Peplies, D Mushi, I Brettar, MG Höfle Frontiers in Microbiology 9, 1958, 2018 | 16 | 2018 |
Single base mutations in the nucleocapsid gene of SARS-CoV-2 affects amplification efficiency of sequence variants and may lead to assay failure N Storey, JR Brown, RPA Pereira, DM O'Sullivan, JF Huggett, R Williams, ... Journal of Clinical Virology Plus 1 (3), 100037, 2021 | 9 | 2021 |
Impact of DNA polymerase choice on assessment of bacterial communities by a Legionella genus-specific next-generation sequencing approach RPA Pereira, J Peplies, I Brettar, MG Höfle bioRxiv, 247445, 2018 | 4 | 2018 |