| Evolution und phylogenetisches System der Isopoda. Stand der Forschung und neue Erkenntnisse W JW Zool Stuttgart 140, 1-262, 1989 | 408 | 1989 |
| A phylogenomic approach to resolve the arthropod tree of life K Meusemann, BM von Reumont, S Simon, F Roeding, S Strauss, P Kück, ... Molecular biology and Evolution 27 (11), 2451-2464, 2010 | 389 | 2010 |
| Parametric and non-parametric masking of randomness in sequence alignments can be improved and leads to better resolved trees P Kück, K Meusemann, J Dambach, B Thormann, BM von Reumont, ... Frontiers in zoology 7, 1-12, 2010 | 243 | 2010 |
| Molecular species identification of Central European ground beetles (Coleoptera: Carabidae) using nuclear rDNA expansion segments and DNA barcodes MJ Raupach, JJ Astrin, K Hannig, MK Peters, MY Stoeckle, JW Wägele Frontiers in zoology 7, 1-15, 2010 | 203 | 2010 |
| The DNA Bank Network: the start from a German initiative B Gemeinholzer, G Dröge, H Zetzsche, G Haszprunar, HP Klenk, ... Biopreservation and Biobanking 9 (1), 51-55, 2011 | 185 | 2011 |
| Cryptic speciation in the giant Antarctic isopod Glyptonotus antarcticus (Isopoda, Valvifera, Chaetiliidae) C Held, JW Wägele Scientia marina 69 (S2), 175-181, 2005 | 182 | 2005 |
| Phylogenetic systematics JW Wägele Verlag Dr. Friedrich Pfeil, München, Germany 3, 27-29, 2005 | 181 | 2005 |
| The taxonomist-an endangered race. A practical proposal for its survival H Wägele, A Klussmann-Kolb, M Kuhlmann, G Haszprunar, D Lindberg, ... Frontiers in zoology 8, 1-7, 2011 | 173 | 2011 |
| Grundlagen der phylogenetischen Systematik JW Wägele Pfeil, 2000 | 167 | 2000 |
| Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships BM von Reumont, K Meusemann, NU Szucsich, E Dell'Ampio, ... BMC Evolutionary Biology 9, 1-19, 2009 | 158 | 2009 |
| The brain of the Remipedia (Crustacea) and an alternative hypothesis on their phylogenetic relationships M Fanenbruck, S Harzsch, JW Wägele Proceedings of the National Academy of Sciences 101 (11), 3868-3873, 2004 | 152 | 2004 |
| Multiple origins of deep-sea Asellota (Crustacea: Isopoda) from shallow waters revealed by molecular data MJ Raupach, C Mayer, M Malyutina, JW Wägele Proceedings of the Royal Society B: Biological Sciences 276 (1658), 799-808, 2009 | 149 | 2009 |
| Distinguishing cryptic species in Antarctic Asellota (Crustacea: Isopoda)-a preliminary study of mitochondrial DNA in Acanthaspidia drygalskii MJ Raupach, JW Wägele Antarctic Science 18 (2), 191-198, 2006 | 140 | 2006 |
| Molecular data reveal a highly diverse species flock within the munnopsoid deep-sea isopod Betamorpha fusiformis (Barnard, 1920)(Crustacea: Isopoda: Asellota) in the Southern Ocean MJ Raupach, M Malyutina, A Brandt, JW Wägele Deep Sea Research Part II: Topical Studies in Oceanography 54 (16-17), 1820-1830, 2007 | 136 | 2007 |
| Visualizing differences in phylogenetic information content of alignments and distinction of three classes of long-branch effects JW Wägele, C Mayer BMC Evolutionary Biology 7, 1-24, 2007 | 134 | 2007 |
| Antarctic benthic diversity T Brey, M Klages, C Dahm, M Gorny, J Gutt, S Hain, M Stiller, WE Arntz, ... Nature 368 (6469), 297-297, 1994 | 125 | 1994 |
| AliGROOVE–visualization of heterogeneous sequence divergence within multiple sequence alignments and detection of inflated branch support P Kück, SA Meid, C Groß, JW Wägele, B Misof BMC bioinformatics 15, 1-15, 2014 | 120 | 2014 |
| Forest fragmentation and selective logging have inconsistent effects on multiple animal-mediated ecosystem processes in a tropical forest M Schleuning, N Farwig, MK Peters, T Bergsdorf, B Bleher, R Brandl, ... PloS one 6 (11), e27785, 2011 | 118 | 2011 |
| Checklist of the terrestrial isopods of the new world (Crustacea, Isopoda, Oniscidea) A Leistikow, JW Wägele Revista brasileira de Zoologia 16, 1-72, 1999 | 109 | 1999 |
| Isopoda JW Wagele Microscopic Anatomy of Invertebrates, Volume 9, Crustacea, 1992 | 109 | 1992 |
