| Estimated transmissibility and impact of SARS-CoV-2 lineage B. 1.1. 7 in England NG Davies, S Abbott, RC Barnard, CI Jarvis, AJ Kucharski, JD Munday, ... Science 372 (6538), 2021 | 2574 | 2021 |
| Assessing transmissibility of SARS-CoV-2 lineage B. 1.1. 7 in England E Volz, S Mishra, M Chand, JC Barrett, R Johnson, L Geidelberg, ... Nature 593 (7858), 266-269, 2021 | 1137 | 2021 |
| Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ... Cell 184 (1), 64-75. e11, 2021 | 1109 | 2021 |
| Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B. 1.617. 2) compared with alpha (B. 1.1. 7) variants of concern: a cohort study KA Twohig, T Nyberg, A Zaidi, S Thelwall, MA Sinnathamby, S Aliabadi, ... The Lancet Infectious Diseases, 2021 | 845 | 2021 |
| Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B. 1.1. 7 B Meng, SA Kemp, G Papa, R Datir, IATM Ferreira, S Marelli, WT Harvey, ... Cell reports 35 (13), 109292, 2021 | 439 | 2021 |
| Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK L du Plessis, JT McCrone, AE Zarebski, V Hill, C Ruis, B Gutierrez, ... Science 371 (6530), 708-712, 2021 | 378 | 2021 |
| Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B. 1.1. 7: an ecological study MS Graham, CH Sudre, A May, M Antonelli, B Murray, T Varsavsky, ... The Lancet Public Health 6 (5), e335-e345, 2021 | 363 | 2021 |
| Recurrent emergence and transmission of a SARS-CoV-2 Spike deletion H69/V70 SA Kemp, B Meng, IATM Ferriera, R Datir, WT Harvey, DA Collier, ... | 249 | 2021 |
| A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa E Wilkinson, M Giovanetti, H Tegally, JE San, R Lessels, D Cuadros, ... Medrxiv, 2021 | 199 | 2021 |
| Tracking the international spread of SARS-CoV-2 lineages B. 1.1. 7 and B. 1.351/501Y-V2 Á O'Toole, V Hill, OG Pybus, A Watts, II Bogoch, K Khan, JP Messina, ... Wellcome Open Research 6, 2021 | 188 | 2021 |
| An integrated national scale SARS-CoV-2 genomic surveillance network T COVID The Lancet. Microbe 1 (3), e99, 2020 | 177 | 2020 |
| Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B. 1.1. 7 emergence MUG Kraemer, V Hill, C Ruis, S Dellicour, S Bajaj, JT McCrone, G Baele, ... Science 373 (6557), 889-895, 2021 | 156 | 2021 |
| Patterns of within-host genetic diversity in SARS-CoV-2 G Tonkin-Hill, I Martincorena, R Amato, ARJ Lawson, M Gerstung, ... Elife 10, e66857, 2021 | 140 | 2021 |
| Rapid increase in Omicron infections in England during December 2021: REACT-1 study P Elliott, B Bodinier, O Eales, H Wang, D Haw, J Elliott, M Whitaker, ... Science 375 (6587), 1406-1411, 2022 | 133 | 2022 |
| Exponential growth, high prevalence of SARS-CoV-2, and vaccine effectiveness associated with the Delta variant P Elliott, D Haw, H Wang, O Eales, CE Walters, KEC Ainslie, C Atchison, ... Science, eabl9551, 2021 | 124 | 2021 |
| Changing composition of SARS-CoV-2 lineages and rise of Delta variant in England S Mishra, S Mindermann, M Sharma, C Whittaker, TA Mellan, T Wilton, ... EClinicalMedicine 39, 101064, 2021 | 124 | 2021 |
| Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland A da Silva Filipe, JG Shepherd, T Williams, J Hughes, E Aranday-Cortes, ... Nature Microbiology 6 (1), 112-122, 2021 | 104 | 2021 |
| Recent and emerging technologies for the rapid diagnosis of infection and antimicrobial resistance AJ Trotter, A Aydin, MJ Strinden, J O’grady Current opinion in microbiology 51, 39-45, 2019 | 104 | 2019 |
| The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance. H Tegally, JE San, M Cotten, B Tegomoh, G Mboowa, DP Martin, C Baxter, ... medRxiv, 2022 | 100 | 2022 |
| CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes DJ Baker, A Aydin, T Le-Viet, GL Kay, S Rudder, L de Oliveira Martins, ... Genome medicine 13 (1), 1-11, 2021 | 96 | 2021 |
