| Controlled vocabularies and semantics in systems biology M Courtot, N Juty, C Knupfer, D Waltemath, A Zhukova, A Drager, ... Molecular Systems Biology 7 (543), 2011 | 338 | 2011 |
| Reproducible computational biology experiments with SED-ML-the simulation experiment description markup language D Waltemath, R Adams, FT Bergmann, M Hucka, F Kolpakov, AK Miller, ... BMC systems biology 5, 1-10, 2011 | 294 | 2011 |
| SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 211 | 2020 |
| Minimum information about a simulation experiment (MIASE) D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ... PLoS computational biology 7 (4), e1001122, 2011 | 164 | 2011 |
| COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ... BMC bioinformatics 15, 1-9, 2014 | 154 | 2014 |
| The systems biology markup language (SBML): language specification for level 3 version 2 core release 2 M Hucka, FT Bergmann, C Chaouiya, A Dräger, S Hoops, SM Keating, ... Journal of integrative bioinformatics 16 (2), 20190021, 2019 | 113 | 2019 |
| The systems biology markup language (SBML): language specification for level 3 version 2 core M Hucka, FT Bergmann, A Dräger, S Hoops, SM Keating, N Le Novère, ... Journal of integrative bioinformatics 15 (1), 20170081, 2018 | 93 | 2018 |
| Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative M Hucka, DP Nickerson, GD Bader, FT Bergmann, J Cooper, E Demir, ... Frontiers in bioengineering and biotechnology 3, 19, 2015 | 87 | 2015 |
| SED-ML–An XML Format for the Implementation of the MIASE Guidelines D Köhn, N Le Novere International Conference on Computational Methods in Systems Biology, 176-190, 2008 | 78 | 2008 |
| Harmonizing semantic annotations for computational models in biology ML Neal, M König, D Nickerson, G Mısırlı, R Kalbasi, A Dräger, K Atalag, ... Briefings in bioinformatics 20 (2), 540-550, 2019 | 69 | 2019 |
| Toward community standards and software for whole-cell modeling D Waltemath, JR Karr, FT Bergmann, V Chelliah, M Hucka, M Krantz, ... IEEE Transactions on Biomedical Engineering 63 (10), 2007-2014, 2016 | 64 | 2016 |
| Combining computational models, semantic annotations and simulation experiments in a graph database R Henkel, O Wolkenhauer, D Waltemath Database 2015, bau130, 2015 | 62 | 2015 |
| A call for virtual experiments: accelerating the scientific process J Cooper, JO Vik, D Waltemath Progress in biophysics and molecular biology 117 (1), 99-106, 2015 | 58 | 2015 |
| How modeling standards, software, and initiatives support reproducibility in systems biology and systems medicine D Waltemath, O Wolkenhauer IEEE Transactions on Biomedical Engineering 63 (10), 1999-2006, 2016 | 56 | 2016 |
| Ranked retrieval of computational biology models R Henkel, L Endler, A Peters, N Le Novère, D Waltemath BMC bioinformatics 11, 1-12, 2010 | 40 | 2010 |
| Initiatives, concepts, and implementation practices of FAIR (findable, accessible, interoperable, and reusable) data principles in health data stewardship practice: protocol … ET Inau, J Sack, D Waltemath, AA Zeleke JMIR research protocols 10 (2), e22505, 2021 | 38 | 2021 |
| Specifications of standards in systems and synthetic biology: status and developments in 2020 F Schreiber, B Sommer, T Czauderna, M Golebiewski, TE Gorochowski, ... Journal of integrative bioinformatics 17 (2-3), 20200022, 2020 | 38 | 2020 |
| Improving the reuse of computational models through version control D Waltemath, R Henkel, R Hälke, M Scharm, O Wolkenhauer Bioinformatics 29 (6), 742-748, 2013 | 35 | 2013 |
| The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE) D Waltemath, M Golebiewski, ML Blinov, P Gleeson, H Hermjakob, ... Journal of integrative bioinformatics 17 (2-3), 20200005, 2020 | 34 | 2020 |
| Notions of similarity for systems biology models R Henkel, R Hoehndorf, T Kacprowski, C Knüpfer, W Liebermeister, ... Briefings in bioinformatics 19 (1), 77-88, 2018 | 32 | 2018 |
David Phillip NickersonAuckland Bioengineering Institute, University of Auckland在 auckland.ac.nz 的电子邮件经过验证
