Assessment of computational methods for the analysis of single-cell ATAC-seq data H Chen, C Lareau, T Andreani, ME Vinyard, SP Garcia, K Clement, ... Genome Biology, 2019 | 275 | 2019 |
GADD45 promotes locus-specific DNA demethylation and 2C cycling in embryonic stem cells KM Schüle, M Leichsenring, T Andreani, V Vastolo, M Mallick, ... Genes & Development, 2019 | 30 | 2019 |
cis-regulatory variation modulates susceptibility to enteric infection in the Drosophila genetic reference panel MV Frochaux, M Bou Sleiman, V Gardeaux, R Dainese, B Hollis, ... Genome Biology, 2020 | 12 | 2020 |
Expression and subcellular localization of USH1C/harmonin in human retina provides insights into pathomechanisms and therapy K Nagel-Wolfrum, RB Fadl, MM Becker, AK Wunderlich, J Schäfer, ... Human Molecular Genetics, 2022 | 10* | 2022 |
Benchmarking computational methods for B-cell receptor reconstruction from single-cell RNA-seq data T Andreani, L Slot, S Gabillard, C Struebing, C Reimertz, V Yaligara, ... NAR Genomics and Bioinformatics, 2022 | 9 | 2022 |
RNA sequencing of human peripheral blood cells indicates up-regulation of immune-related genes in Huntington’s disease MA Andrade-Navarro, K Muehlenberg, E Spruth, N Mah, ... Frontiers in Neurology, 2020 | 9 | 2020 |
Enteric infection induces Lark-mediated intron retention at the 5′ end of Drosophila genes M Bou Sleiman, MV Frochaux, T Andreani, D Osman, R Guigo, ... Genome Biology, 2020 | 7 | 2020 |
DiSiR: fast and robust method to identify ligand–receptor interactions at subunit level from single-cell RNA-sequencing data MR Vahid, AH Kurlovs, T Andreani, F Auge´, R Olfati-Saber, E de Rinaldis, ... NAR Genomics and Bioinformatics, 2023 | 6 | 2023 |
Computational identification of cell-specific variable regions in ChIP-seq data T Andreani, S Albrecht, JF Fontaine, M Andrade Nucleic Acids Research, 2020 | 4 | 2020 |
Single-cell specific and interpretable machine learning models for sparse scChIP-seq data imputation S Albrecht, T Andreani, MA Andrade, JF Fontaine PLoS One 270043, 2022 | 3* | 2022 |
From DNA sequences to cell types by detecting regulatory genomic regions in sequencing data T Andreani Johannes Gutenberg University of Mainz, 2019 | | 2019 |
Production of collagen I and fibronectin in human fibroblasts and adipose derived stem cells treated with ascorbic acid T Andreani Series in Applied Sciences - Mathematical Modelling, Numerical and Data …, 2018 | | 2018 |