| A Python library for probabilistic analysis of single-cell omics data A Gayoso, R Lopez, G Xing, P Boyeau, V Valiollah Pour Amiri, J Hong, ... Nature biotechnology 40 (2), 163-166, 2022 | 306 | 2022 |
| DestVI identifies continuums of cell types in spatial transcriptomics data R Lopez, B Li, H Keren-Shaul, P Boyeau, M Kedmi, D Pilzer, A Jelinski, ... Nature biotechnology 40 (9), 1360-1369, 2022 | 102 | 2022 |
| Predicting cellular responses to complex perturbations in high‐throughput screens M Lotfollahi, A Klimovskaia Susmelj, C De Donno, L Hetzel, Y Ji, IL Ibarra, ... Molecular systems biology 19 (6), e11517, 2023 | 94 | 2023 |
| Valiollah Pour Amiri A Gayoso, R Lopez, G Xing, P Boyeau V., Hong, J., Wu, K., Jayasuriya, M., Mehlman, E., Langevin, M., et al, 163-166, 2022 | 64 | 2022 |
| Decision-making with auto-encoding variational Bayes R Lopez, P Boyeau, N Yosef, M Jordan, J Regier Advances in Neural Information Processing Systems 33, 5081-5092, 2020 | 38 | 2020 |
| Multi-resolution deconvolution of spatial transcriptomics data reveals continuous patterns of inflammation R Lopez, B Li, H Keren-Shaul, P Boyeau, M Kedmi, D Pilzer, A Jelinski, ... BioRxiv, 2021.05. 10.443517, 2021 | 22 | 2021 |
| Deep generative models for detecting differential expression in single cells P Boyeau, R Lopez, J Regier, A Gayoso, MI Jordan, N Yosef bioRxiv, 794289, 2019 | 19 | 2019 |
| An empirical Bayes method for differential expression analysis of single cells with deep generative models P Boyeau, J Regier, A Gayoso, MI Jordan, R Lopez, N Yosef Proceedings of the National Academy of Sciences 120 (21), e2209124120, 2023 | 18 | 2023 |
| Deep generative modeling of sample-level heterogeneity in single-cell genomics P Boyeau, J Hong, A Gayoso, M Kim, JL McFaline-Figueroa, MI Jordan, ... BioRxiv, 2022.10. 04.510898, 2022 | 11 | 2022 |
| CherryML: scalable maximum likelihood estimation of phylogenetic models S Prillo, Y Deng, P Boyeau, X Li, PY Chen, YS Song Nature methods 20 (8), 1232-1236, 2023 | 3 | 2023 |
| AutoEval Done Right: Using Synthetic Data for Model Evaluation P Boyeau, AN Angelopoulos, N Yosef, J Malik, MI Jordan arXiv preprint arXiv:2403.07008, 2024 | 2 | 2024 |
| Calibrated Identification of Feature Dependencies in Single-cell Multiomics P Boyeau, S Bates, C Ergen, MI Jordan, N Yosef bioRxiv, 2023.11. 03.565520, 2023 | | 2023 |
