Parity and time reversal elucidate both decision-making in empirical models and attractor scaling in critical Boolean networks JC Rozum, J Gómez Tejeda Zañudo, X Gan, D Deritei, R Albert Science Advances 7 (29), eabf8124, 2021 | 48* | 2021 |
pystablemotifs: Python library for attractor identification and control in Boolean networks JC Rozum, D Deritei, KH Park, J Gómez Tejeda Zañudo, R Albert Bioinformatics 38 (5), 1465-1466, 2022 | 33 | 2022 |
Identifying (un)controllable dynamical behavior in complex networks JC Rozum, R Albert PLoS computational biology 14 (12), e1006630, 2018 | 30 | 2018 |
A feedback loop of conditionally stable circuits drives the cell cycle from checkpoint to checkpoint D Deritei, J Rozum, E Ravasz Regan, R Albert Scientific reports 9 (1), 16430, 2019 | 29 | 2019 |
Self-sustaining positive feedback loops in discrete and continuous systems JC Rozum, R Albert Journal of Theoretical Biology 459, 36-44, 2018 | 12 | 2018 |
Leveraging network structure in nonlinear control J Rozum, R Albert NPJ systems biology and applications 8 (1), 36, 2022 | 11 | 2022 |
Models of cell processes are far from the edge of chaos KH Park, FX Costa, LM Rocha, R Albert, JC Rozum PRX life 1 (2), 023009, 2023 | 7* | 2023 |
Effective connectivity and bias entropy improve prediction of dynamical regime in automata networks FX Costa, JC Rozum, AM Marcus, LM Rocha Entropy 25 (2), 374, 2023 | 7 | 2023 |
Controlling the cell cycle restriction switch across the information gradient JC Rozum, R Albert Advances in Complex Systems, 1950020, 2020 | 7 | 2020 |
Boolean Networks as Predictive Models of Emergent Biological Behaviors JC Rozum, C Campbell, E Newby, FSF Nasrollahi, R Albert Cambridge University Press, 2024 | 4 | 2024 |
myAURA: Personalized health library for epilepsy management via knowledge graph sparsification and visualization RB Correia, JC Rozum, L Cross, J Felag, M Gallant, Z Guo, BW Herr II, ... arXiv preprint arXiv:2405.05229, 2024 | 1 | 2024 |
From years to hours: accelerating model refinement KH Park, JC Rozum, R Albert BioRxiv, 2023.11. 14.567002, 2023 | 1 | 2023 |
Flavors of Boolean network reprogramming in the CoLoMoTo notebook environment. C Biane, D Deritei, J Rozum, C Su, J Pang, J Zañudo, L Paulevé 18th International Conference on Computational Methods in Systems Biology, 2020 | 1 | 2020 |
Classification of five-dimensional lie algebras with one-dimensional subalgebras acting as subalgebras of the Lorentz algebra J Rozum Utah State University, 2016 | 1 | 2016 |
The Effect of Noise on the Density Classification Task for Various Cellular Automata Rules A Challa, D Hao, JC Rozum, LM Rocha ALIFE 2024: Proceedings of the 2024 Artificial Life Conference, 2024 | | 2024 |
Challenges and opportunities for digital twins in precision medicine: a complex systems perspective M De Domenico, L Allegri, G Caldarelli, V d'Andrea, B Di Camillo, ... arXiv preprint arXiv:2405.09649, 2024 | | 2024 |
Refinement of an Epilepsy Dictionary through Human Annotation of Health-related posts on Instagram A Min, X Wang, RB Correia, J Rozum, WR Miller, LM Rocha arXiv preprint arXiv:2405.08784, 2024 | | 2024 |
CANA v1. 0.0 and schematodes: efficient quantification of symmetry in Boolean automata AM Marcus, J Rozum, H Sizek, LM Rocha arXiv preprint arXiv:2405.07123, 2024 | | 2024 |
Selecting focused digital cohorts from social media using the metric backbone of biomedical knowledge graphs Z Guo, J Felag, JC Rozum, RB Correia, LM Rocha arXiv preprint arXiv:2405.07072, 2024 | | 2024 |
myAURA: Personalized health library for epilepsy management via knowledge graph sparsification and visualization R Brattig Correia, JC Rozum, L Cross, J Felag, M Gallant, Z Guo, BW Herr, ... arXiv e-prints, arXiv: 2405.05229, 2024 | | 2024 |