Optimal-transport analysis of single-cell gene expression identifies developmental trajectories in reprogramming G Schiebinger, J Shu, M Tabaka, B Cleary, V Subramanian, A Solomon, ... Cell 176 (4), 928-943. e22, 2019 | 716 | 2019 |
A cellular taxonomy of the bone marrow stroma in homeostasis and leukemia N Baryawno, D Przybylski, MS Kowalczyk, Y Kfoury, N Severe, ... Cell 177 (7), 1915-1932. e16, 2019 | 702 | 2019 |
Decoding human fetal liver haematopoiesis DM Popescu, RA Botting, E Stephenson, K Green, S Webb, L Jardine, ... Nature 574 (7778), 365-371, 2019 | 458 | 2019 |
Cycling cancer persister cells arise from lineages with distinct programs Y Oren, M Tsabar, MS Cuoco, L Amir-Zilberstein, HF Cabanos, JC Hütter, ... Nature 596 (7873), 576-582, 2021 | 281 | 2021 |
TIM-3 restrains anti-tumour immunity by regulating inflammasome activation KO Dixon, M Tabaka, MA Schramm, S Xiao, R Tang, D Dionne, ... Nature 595 (7865), 101-106, 2021 | 233 | 2021 |
Scaling form of viscosity at all length-scales in poly (ethylene glycol) solutions studied by fluorescence correlation spectroscopy and capillary electrophoresis R Holyst, A Bielejewska, J Szymański, A Wilk, A Patkowski, J Gapiński, ... Physical Chemistry Chemical Physics 11 (40), 9025-9032, 2009 | 214 | 2009 |
Transcriptional atlas of intestinal immune cells reveals that neuropeptide α-CGRP modulates group 2 innate lymphoid cell responses H Xu, J Ding, CBM Porter, A Wallrapp, M Tabaka, S Ma, S Fu, X Guo, ... Immunity 51 (4), 696-708. e9, 2019 | 181 | 2019 |
Genetic determinants of co-accessible chromatin regions in activated T cells across humans RE Gate, CS Cheng, AP Aiden, A Siba, M Tabaka, D Lituiev, I Machol, ... Nature genetics 50 (8), 1140-1150, 2018 | 172 | 2018 |
Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq B Li, J Gould, Y Yang, S Sarkizova, M Tabaka, O Ashenberg, Y Rosen, ... Nature methods 17 (8), 793-798, 2020 | 147 | 2020 |
Biologistics—Diffusion coefficients for complete proteome of Escherichia coli T Kalwarczyk, M Tabaka, R Holyst Bioinformatics 28 (22), 2971-2978, 2012 | 112 | 2012 |
Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells EL Bao, SK Nandakumar, X Liao, AG Bick, J Karjalainen, M Tabaka, ... Nature 586 (7831), 769-775, 2020 | 111 | 2020 |
Bimodal gene expression in noncooperative regulatory systems A Ochab-Marcinek, M Tabaka Proceedings of the National Academy of Sciences 107 (51), 22096-22101, 2010 | 104 | 2010 |
Integrated scRNA-Seq identifies human postnatal thymus seeding progenitors and regulatory dynamics of differentiating immature thymocytes M Lavaert, KL Liang, N Vandamme, JE Park, J Roels, MS Kowalczyk, B Li, ... Immunity 52 (6), 1088-1104. e6, 2020 | 100 | 2020 |
The effect of macromolecular crowding on mobility of biomolecules, association kinetics, and gene expression in living cells M Tabaka, T Kalwarczyk, J Szymanski, S Hou, R Holyst Frontiers in Physics 2, 54, 2014 | 94 | 2014 |
Blood and immune development in human fetal bone marrow and Down syndrome L Jardine, S Webb, I Goh, M Quiroga Londoño, G Reynolds, M Mather, ... Nature 598 (7880), 327-331, 2021 | 82 | 2021 |
Motion of nanoprobes in complex liquids within the framework of the length-scale dependent viscosity model T Kalwarczyk, K Sozanski, A Ochab-Marcinek, J Szymanski, M Tabaka, ... Advances in colloid and interface science 223, 55-63, 2015 | 78 | 2015 |
Reconstruction of developmental landscapes by optimal-transport analysis of single-cell gene expression sheds light on cellular reprogramming G Schiebinger, J Shu, M Tabaka, B Cleary, V Subramanian, A Solomon, ... BioRxiv, 191056, 2017 | 73 | 2017 |
Quantitative influence of macromolecular crowding on gene regulation kinetics M Tabaka, T Kalwarczyk, R Hołyst Nucleic Acids Research 42 (2), 727-738, 2014 | 67 | 2014 |
Small crowders slow down kinesin-1 stepping by hindering motor domain diffusion K Sozański, F Ruhnow, A Wiśniewska, M Tabaka, S Diez, R Hołyst Physical review letters 115 (21), 218102, 2015 | 55 | 2015 |
Transcriptional leakage versus noise: a simple mechanism of conversion between binary and graded response in autoregulated genes A Ochab-Marcinek, M Tabaka Physical Review E 91 (1), 012704, 2015 | 41 | 2015 |