Actionable diagnosis of neuroleptospirosis by next-generation sequencing MR Wilson, SN Naccache, E Samayoa, M Biagtan, H Bashir, G Yu, ... New England Journal of Medicine 370 (25), 2408-2417, 2014 | 896 | 2014 |
Clinical metagenomic sequencing for diagnosis of meningitis and encephalitis MR Wilson, HA Sample, KC Zorn, S Arevalo, G Yu, J Neuhaus, ... New England Journal of Medicine 380 (24), 2327-2340, 2019 | 765 | 2019 |
Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis AL Greninger, SN Naccache, S Federman, G Yu, P Mbala, V Bres, ... Genome medicine 7, 1-13, 2015 | 580 | 2015 |
A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples SN Naccache, S Federman, N Veeraraghavan, M Zaharia, D Lee, ... Genome research 24 (7), 1180-1192, 2014 | 495 | 2014 |
A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012–14): a retrospective cohort study AL Greninger, SN Naccache, K Messacar, A Clayton, G Yu, S Somasekar, ... The Lancet Infectious Diseases 15 (6), 671-682, 2015 | 412 | 2015 |
Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid S Miller, SN Naccache, E Samayoa, K Messacar, S Arevalo, S Federman, ... Genome research 29 (5), 831-842, 2019 | 398 | 2019 |
Diagnosis of neuroinvasive astrovirus infection in an immunocompromised adult with encephalitis by unbiased next-generation sequencing SN Naccache, KS Peggs, FM Mattes, R Phadke, JA Garson, P Grant, ... Clinical Infectious Diseases 60 (6), 919-923, 2015 | 316 | 2015 |
Comparison of Commercially Available and Laboratory-Developed Assays for In Vitro Detection of SARS-CoV-2 in Clinical Laboratories JA Lieberman, G Pepper, SN Naccache, ML Huang, KR Jerome, ... Journal of clinical microbiology 58 (8), 10.1128/jcm. 00821-20, 2020 | 275 | 2020 |
The perils of pathogen discovery: origin of a novel parvovirus-like hybrid genome traced to nucleic acid extraction spin columns SN Naccache, AL Greninger, D Lee, LL Coffey, T Phan, A Rein-Weston, ... Journal of virology 87 (22), 11966-11977, 2013 | 267 | 2013 |
An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data X Deng, SN Naccache, T Ng, S Federman, L Li, CY Chiu, EL Delwart Nucleic acids research 43 (7), e46-e46, 2015 | 248 | 2015 |
Binding of internalized receptors to the PDZ domain of GIPC/synectin recruits myosin VI to endocytic vesicles SN Naccache, T Hasson, A Horowitz Proceedings of the National Academy of Sciences 103 (34), 12735-12740, 2006 | 168 | 2006 |
Practical comparison of the BioFire FilmArray pneumonia panel to routine diagnostic methods and potential impact on antimicrobial stewardship in adult hospitalized patients … BW Buchan, S Windham, JM Balada-Llasat, A Leber, A Harrington, ... Journal of Clinical Microbiology 58 (7), 10.1128/jcm. 00135-20, 2020 | 163 | 2020 |
Multicenter evaluation of the BioFire FilmArray pneumonia/pneumonia plus panel for detection and quantification of agents of lower respiratory tract infection CN Murphy, R Fowler, JM Balada-Llasat, A Carroll, H Stone, O Akerele, ... Journal of Clinical Microbiology 58 (7), 10.1128/jcm. 00128-20, 2020 | 159 | 2020 |
Uncoated endocytic vesicles require the unconventional myosin, Myo6, for rapid transport through actin barriers L Aschenbrenner, SN Naccache, T Hasson Molecular biology of the cell 15 (5), 2253-2263, 2004 | 142 | 2004 |
Coinfections of Zika and Chikungunya viruses in Bahia, Brazil, identified by metagenomic next-generation sequencing SI Sardi, S Somasekar, SN Naccache, AC Bandeira, LB Tauro, ... Journal of clinical microbiology 54 (9), 2348-2353, 2016 | 141 | 2016 |
The eukaryotic gut virome in hematopoietic stem cell transplantation: new clues in enteric graft-versus-host disease J Legoff, M Resche-Rigon, J Bouquet, M Robin, SN Naccache, ... Nature medicine 23 (9), 1080-1085, 2017 | 137 | 2017 |
Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing AL Greninger, K Messacar, T Dunnebacke, SN Naccache, S Federman, ... Genome medicine 7, 1-14, 2015 | 117 | 2015 |
Neurobrucellosis: unexpected answer from metagenomic next-generation sequencing K Mongkolrattanothai, SN Naccache, JM Bender, E Samayoa, E Pham, ... Journal of the Pediatric Infectious Diseases Society 6 (4), 393-398, 2017 | 109 | 2017 |
Discovery of a novel human pegivirus in blood associated with hepatitis C virus co-infection MG Berg, D Lee, K Coller, M Frankel, A Aronsohn, K Cheng, K Forberg, ... PLoS pathogens 11 (12), e1005325, 2015 | 106 | 2015 |
Reinfection with SARS-CoV-2 and waning humoral immunity: a case report JD Goldman, K Wang, K Röltgen, SCA Nielsen, JC Roach, SN Naccache, ... Vaccines 11 (1), 5, 2022 | 103* | 2022 |