Rigidity Loss in Disordered Systems: Three Scenarios WG Ellenbroek, VF Hagh, A Kumar, MF Thorpe, M van Hecke Physical review letters 114 (13), 135501, 2015 | 93 | 2015 |
Path similarity analysis: a method for quantifying macromolecular pathways SL Seyler, A Kumar, MF Thorpe, O Beckstein PLoS computational biology 11 (10), e1004568, 2015 | 74 | 2015 |
Amorphous graphene: a realization of Zachariasen’s glass A Kumar, M Wilson, MF Thorpe Journal of Physics: Condensed Matter 24 (48), 485003, 2012 | 69 | 2012 |
The Role of Conformational Dynamics and Allostery in the Disease Development of Human Ferritin A Kumar, TJ Glembo, SB Ozkan Biophysical journal 109 (6), 1273-1281, 2015 | 61 | 2015 |
Insulating behavior of an amorphous graphene membrane D Van Tuan, A Kumar, S Roche, F Ortmann, MF Thorpe, P Ordejon Physical Review B 86 (12), 121408, 2012 | 57 | 2012 |
Using Machine Learning to Assess the Risk of and Prevent Water Main Breaks A Kumar, SAA Rizvi, B Brooks, RA Vanderveld, KH Wilson, C Kenney, ... Proceedings of the 24th ACM SIGKDD International Conference on Knowledge …, 2018 | 49 | 2018 |
Pentagonal puckering in a sheet of amorphous graphene Y Li, F Inam, A Kumar, MF Thorpe, DA Drabold physica status solidi (b) 248 (9), 2082-2086, 2011 | 49 | 2011 |
Integration of structural dynamics and molecular evolution via protein interaction networks: a new era in genomic medicine A Kumar, BM Butler, S Kumar, SB Ozkan Current opinion in structural biology 35, 135-142, 2015 | 40 | 2015 |
Predictive analytics for retention in care in an urban HIV clinic A Ramachandran, A Kumar, H Koenig, A De Unanue, C Sung, J Walsh, ... Scientific reports 10 (1), 6421, 2020 | 39 | 2020 |
Modeling vitreous silica bilayers M Wilson, A Kumar, D Sherrington, MF Thorpe Physical Review B 87 (21), 214108, 2013 | 39 | 2013 |
Dynamic coupling of residues within proteins as a mechanistic foundation of many enigmatic pathogenic missense variants NJ Ose, BM Butler, A Kumar, IC Kazan, M Sanderford, S Kumar, ... PLoS computational biology 18 (4), e1010006, 2022 | 24 | 2022 |
Ring statistics of silica bilayers A Kumar, D Sherrington, M Wilson, MF Thorpe Journal of Physics: Condensed Matter 26 (39), 395401, 2014 | 23 | 2014 |
Coevolving residues inform protein dynamics profiles and disease susceptibility of nSNVs BM Butler, IC Kazan, A Kumar, SB Ozkan PLOS Computational Biology 14 (11), e1006626, 2018 | 20 | 2018 |
Partial unfolding and refolding for structure refinement: A unified approach of geometric simulations and molecular dynamics A Kumar, P Campitelli, MF Thorpe, SB Ozkan Proteins: Structure, Function, and Bioinformatics 83 (12), 2279-2292, 2015 | 5 | 2015 |
A Machine Learning System for Retaining Patients in HIV Care A Kumar, A Ramachandran, A De Unanue, C Sung, J Walsh, J Schneider, ... arXiv preprint arXiv:2006.04944, 2020 | 4 | 2020 |
Protein and RNA structure prediction by integration of co-evolutionary information into molecular simulation E De Leonardis, B Lutz, S Cocco, R Monasson, H Szurmant, M Weigt, ... Biophysical Journal 108 (2), 13a-14a, 2015 | 4 | 2015 |
Dynamic Allosteric Residue Coupling Reveals Disease Mechanism for Gaucher Disease and NSNVS Across the Proteome N Ose, BM Butler, A Kumar, SB Ozkan, S Kumar Biophysical Journal 118 (3), 53a, 2020 | 3 | 2020 |
Quantifying Macromolecular Conformational Transition Pathways O Beckstein, SL Seyler, A Kumar, MF Thorpe Biophysical Journal 108 (2), 13a, 2015 | 1 | 2015 |
Monday, February 4, 2013 229a A Kumar, MF Thorpe, SB Ozkan | 1* | |
Predictive Analytics for Retention in Care in an Urban HIV Clinic R Arthi, K Avishek, H Koenig, UA De, C Sung, J Walsh, J Schneider, ... Scientific Reports (Nature Publisher Group) 10 (1), 2020 | | 2020 |