Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms DE Gordon, J Hiatt, M Bouhaddou, VV Rezelj, S Ulferts, H Braberg, ... Science 370 (6521), eabe9403, 2020 | 635 | 2020 |
Predicting drug response and synergy using a deep learning model of human cancer cells BM Kuenzi, J Park, SH Fong, KS Sanchez, J Lee, JF Kreisberg, J Ma, ... Cancer cell 38 (5), 672-684. e6, 2020 | 310 | 2020 |
Going the distance for protein function prediction: a new distance metric for protein interaction networks M Cao, H Zhang, J Park, NM Daniels, ME Crovella, LJ Cowen, B Hescott PloS one 8 (10), e76339, 2013 | 158 | 2013 |
New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence M Cao, CM Pietras, X Feng, KJ Doroschak, T Schaffner, J Park, H Zhang, ... Bioinformatics 30 (12), i219-i227, 2014 | 132 | 2014 |
A protein interaction landscape of breast cancer M Kim, J Park, M Bouhaddou, K Kim, A Rojc, M Modak, M Soucheray, ... Science 374 (6563), eabf3066, 2021 | 91 | 2021 |
A multi-scale map of cell structure fusing protein images and interactions Y Qin, EL Huttlin, CF Winsnes, ML Gosztyla, L Wacheul, MR Kelly, ... Nature 600 (7889), 536-542, 2021 | 56 | 2021 |
A protein network map of head and neck cancer reveals PIK3CA mutant drug sensitivity DL Swaney, DJ Ramms, Z Wang, J Park, Y Goto, M Soucheray, N Bhola, ... Science 374 (6563), eabf2911, 2021 | 43 | 2021 |
Interpretation of cancer mutations using a multiscale map of protein systems F Zheng, MR Kelly, DJ Ramms, ML Heintschel, K Tao, B Tutuncuoglu, ... Science 374 (6563), eabf3067, 2021 | 40 | 2021 |
Towards a more molecular taxonomy of disease J Park, BJ Hescott, DK Slonim Journal of biomedical semantics 8, 1-11, 2017 | 14 | 2017 |
Finding novel molecular connections between developmental processes and disease J Park, HC Wick, DE Kee, K Noto, JL Maron, DK Slonim PLoS computational biology 10 (5), e1003578, 2014 | 14 | 2014 |
Pathway centrality in protein interaction networks identifies putative functional mediating pathways in pulmonary disease J Park, BJ Hescott, DK Slonim Scientific reports 9 (1), 5863, 2019 | 10 | 2019 |
Mapping cell structure across scales by fusing protein images and interactions Y Qin, CF Winsnes, EL Huttlin, F Zheng, W Ouyang, J Park, A Pitea, ... bioRxiv, 2020.06. 21.163709, 2020 | 6 | 2020 |
Pathway centrality in protein interaction networks identifies functional mediators of pulmonary disease J Park, BJ Hescott, DK Slonim bioRxiv, 171942, 2017 | 1 | 2017 |
Building a Molecular Taxonomy of Disease J Park, BJ Hescott, DK Slonim Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017 | | 2017 |
Discovering molecular mechanisms of human disease through gene sets and networks J Park Tufts University, 2017 | | 2017 |
An Abstract View of Associations Between Diseases and Developmental Gene Sets J Park, K Noto, DE Kee, H Wick, D Slonim | | |