Disentangling Sources of Gene Tree Discordance in Phylogenomic Data Sets: Testing Ancient Hybridizations in Amaranthaceae s.l DF Morales-Briones, G Kadereit, DT Tefarikis, MJ Moore, SA Smith, ... Systematic Biology 70 (2), 219-235, 2021 | 137 | 2021 |
Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae) DF MoralesBriones, A Liston, DC Tank New Phytologist 218 (4), 1668-1684, 2018 | 136 | 2018 |
A phylogenomic perspective on gene tree conflict and character evolution in Caprifoliaceae using target enrichment data, with Zabelioideae recognized as a new subfamily HX Wang, DF MoralesBriones, MJ Moore, J Wen, HF Wang Journal of Systematics and Evolution 59 (5), 897-914, 2021 | 46 | 2021 |
Analysis of Paralogs in Target Enrichment Data Pinpoints Multiple Ancient Polyploidy Events in Alchemilla s.l. (Rosaceae) DF Morales-Briones, B Gehrke, CH Huang, A Liston, H Ma, HE Marx, ... Systematic Biology 71 (1), 190-207, 2022 | 38 | 2022 |
Phylogeny and evolution of the neotropical radiation of Lachemilla (Rosaceae): uncovering a history of reticulate evolution and implications for infrageneric classification DF Morales-Briones, K Romoleroux, F Kolář, DC Tank Systematic Botany 43 (1), 17-34, 2018 | 36 | 2018 |
Phylogenomic analyses of Alismatales shed light into adaptations to aquatic environments LY Chen, B Lu, DF Morales-Briones, ML Moody, F Liu, GW Hu, CH Huang, ... Molecular Biology and Evolution 39 (5), msac079, 2022 | 31 | 2022 |
Fluidigm2PURC: Automated processing and haplotype inference for double-barcoded PCR amplicons PD Blischak, M Latvis, DF Morales-Briones, JC Johnson, VS Di Stilio, ... Application in Plant Sciences 6 (6), e01156, 2018 | 19 | 2018 |
Performance of gene expression analyses using de novo assembled transcripts in polyploid species LY Chen, DF Morales-Briones, CN Passow, Y Yang Bioinformatics 35 (21), 4314-4320, 2019 | 16 | 2019 |
Extensive allopolyploidy in the neotropical genus Lachemilla (Rosaceae) revealed by PCRbased target enrichment of the nuclear ribosomal DNA cistron and … DF MoralesBriones, DC Tank American Journal of Botany 106 (3), 415-437, 2019 | 16 | 2019 |
Primers for Castilleja and their utility across Orobanchaceae: I. Chloroplast primers1 M Latvis, SME Mortimer, DF MoralesBriones, S Torpey, S UribeConvers, ... Applications in plant sciences 5 (9), 1700020, 2017 | 14 | 2017 |
Phylogenomic analyses in Phrymaceae reveal extensive gene tree discordance in relationships among major clades DF MoralesBriones, N Lin, EY Huang, DL Grossenbacher, JM Sobel, ... American Journal of Botany, 2022 | 9 | 2022 |
Lachemilla mexiquense (Rosaceae), a new species from Mexico DF Morales-Briones PhytoKeys, 25, 2016 | 8 | 2016 |
Nuclear and plastid phylogenomic analyses provide insights into the reticulate evolution, species delimitation, and biogeography of the SinoJapanese disjunctive Diabelia … XR Ke, DF MoralesBriones, HX Wang, QH Sun, JB Landis, J Wen, ... Journal of Systematics and Evolution 60 (6), 1331-1343, 2022 | 7 | 2022 |
Phylogenomic analyses of the East Asian endemic Abelia (Caprifoliaceae) shed insights into the temporal and spatial diversification history with widespread … QH Sun, DF Morales-Briones, HX Wang, JB Landis, J Wen, HF Wang Annals of Botany 129 (2), 201-216, 2022 | 7 | 2022 |
Chloroplast primers for cladewide phylogenetic studies of Thalictrum DF MoralesBriones, T Arias, VS Di Stilio, DC Tank Applications in Plant Sciences 7 (10), e11294, 2019 | 7 | 2019 |
Lachemilla jaramilloi and L. talamanquensis spp. nov. (Rosaceae) from Ecuador and Costa Rica K Romoleroux, DF MoralesBriones Nordic Journal of Botany 30 (6), 732-736, 2012 | 6 | 2012 |
Exploring the possible role of hybridization in the evolution of photosynthetic pathways in Flaveria (Asteraceae), the prime model of C4 photosynthesis evolution DF Morales-Briones, G Kadereit Bulletin of the Society of Systematic Biologists 2 (4), 1-16, 2023 | 5 | 2023 |
Phylogenomics insights into gene evolution, rapid species diversification, and morphological innovation of the apple tribe (Maleae, Rosaceae) L Zhang, DF MoralesBriones, Y Li, G Zhang, T Zhang, CH Huang, P Guo, ... New Phytologist 240 (5), 2102-2120, 2023 | 4 | 2023 |
On the hybrid origin of the C2 Salsola divaricata agg. (Amaranthaceae) from C3 and C4 parental lineages DT Tefarikis, DF MoralesBriones, Y Yang, G Edwards, G Kadereit New Phytologist 234 (5), 1876-1890, 2022 | 4 | 2022 |
Target sequence capture data shed light on the deeper evolutionary relationships of subgenus Chamaecerasus in Lonicera (Caprifoliaceae) QH Sun, DF Morales-Briones, HX Wang, JB Landis, J Wen, HF Wang Molecular Phylogenetics and Evolution 184, 107808, 2023 | 3 | 2023 |