| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 16824 | 2012 |
| Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007 | 6050 | 2007 |
| Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes A Siepel, G Bejerano, JS Pedersen, AS Hinrichs, M Hou, K Rosenbloom, ... Genome research 15 (8), 1034-1050, 2005 | 4783 | 2005 |
| Genetic effects on gene expression across human tissues GTEx Consortium Lead analysts: Aguet François 1 Brown Andrew A. 2 3 4 Castel ... Nature 550 (7675), 204-213, 2017 | 3370 | 2017 |
| The GTEx Consortium atlas of genetic regulatory effects across human tissues GTEx Consortium Science 369 (6509), 1318-1330, 2020 | 2700 | 2020 |
| Detection of nonneutral substitution rates on mammalian phylogenies KS Pollard, MJ Hubisz, KR Rosenbloom, A Siepel Genome research 20 (1), 110-121, 2010 | 2683 | 2010 |
| Genome sequence of the Brown Norway rat yields insights into mammalian evolution University of Utah Weiss Robert B. 14 Dunn Diane M. 14, ... Nature 428 (6982), 493-521, 2004 | 2536 | 2004 |
| The ENCODE (ENCyclopedia of DNA elements) project EA Feingold, PJ Good, MS Guyer, S Kamholz, L Liefer, K Wetterstrand, ... Science 306 (5696), 636-640, 2004 | 2393 | 2004 |
| Initial sequence of the chimpanzee genome and comparison with the human genome Chimpanzee Sequencing and Analysis Consortium Waterson Robert H. waterston ... Nature 437 (7055), 69-87, 2005 | 2298 | 2005 |
| Aligning multiple genomic sequences with the threaded blockset aligner M Blanchette, WJ Kent, C Riemer, L Elnitski, AFA Smit, KM Roskin, ... Genome research 14 (4), 708-715, 2004 | 2163 | 2004 |
| A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014 | 1929 | 2014 |
| The UCSC genome browser database: update 2006 AS Hinrichs, D Karolchik, R Baertsch, GP Barber, G Bejerano, H Clawson, ... Nucleic acids research 34 (suppl_1), D590-D598, 2006 | 1413 | 2006 |
| The UCSC genome browser database: update 2011 PA Fujita, B Rhead, AS Zweig, AS Hinrichs, D Karolchik, MS Cline, ... Nucleic acids research 39 (suppl_1), D876-D882, 2010 | 1279 | 2010 |
| The UCSC genome browser database: 2015 update KR Rosenbloom, J Armstrong, GP Barber, J Casper, H Clawson, ... Nucleic acids research 43 (D1), D670-D681, 2015 | 1082 | 2015 |
| Toil enables reproducible, open source, big biomedical data analyses J Vivian, AA Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ... Nature biotechnology 35 (4), 314-316, 2017 | 1037 | 2017 |
| The UCSC Genome Browser database: extensions and updates 2013 LR Meyer, AS Zweig, AS Hinrichs, D Karolchik, RM Kuhn, M Wong, ... Nucleic acids research 41 (D1), D64-D69, 2012 | 902 | 2012 |
| ENCODE data in the UCSC Genome Browser: year 5 update KR Rosenbloom, CA Sloan, VS Malladi, TR Dreszer, K Learned, ... Nucleic acids research 41 (D1), D56-D63, 2012 | 891 | 2012 |
| The UCSC genome browser database: 2019 update M Haeussler, AS Zweig, C Tyner, ML Speir, KR Rosenbloom, BJ Raney, ... Nucleic acids research 47 (D1), D853-D858, 2019 | 782 | 2019 |
| The UCSC genome browser database: 2014 update D Karolchik, GP Barber, J Casper, H Clawson, MS Cline, M Diekhans, ... Nucleic acids research 42 (D1), D764-D770, 2014 | 773 | 2014 |
| The UCSC genome browser database: update 2010 B Rhead, D Karolchik, RM Kuhn, AS Hinrichs, AS Zweig, PA Fujita, ... Nucleic acids research 38 (suppl_1), D613-D619, 2010 | 750 | 2010 |
