Evolution of genes and genomes on the Drosophila phylogeny AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ... Nature 450 (7167), 203-18, 2007 | 2260 | 2007 |
Wisdom of crowds for robust gene network inference D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ... Nature methods 9 (8), 796-804, 2012 | 1831 | 2012 |
Next-generation machine learning for biological networks DM Camacho, KM Collins, RK Powers, JC Costello, JJ Collins Cell 173 (7), 1581-1592, 2018 | 870 | 2018 |
A community effort to assess and improve drug sensitivity prediction algorithms JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ... Nature biotechnology 32 (12), 1202-1212, 2014 | 767 | 2014 |
Bactericidal antibiotics induce mitochondrial dysfunction and oxidative damage in mammalian cells S Kalghatgi, CS Spina, JC Costello, M Liesa, JR Morones-Ramirez, ... Science translational medicine 5 (192), 192ra85-192ra85, 2013 | 573 | 2013 |
Transcriptional profiling of stroma from inflamed and resting lymph nodes defines immunological hallmarks D Malhotra, AL Fletcher, J Astarita, V Lukacs-Kornek, P Tayalia, ... Nature immunology 13 (5), 499-510, 2012 | 471 | 2012 |
Oncogenic NRAS signaling differentially regulates survival and proliferation in melanoma LN Kwong, JC Costello, H Liu, S Jiang, TL Helms, AE Langsdorf, ... Nature medicine 18 (10), 1503-1510, 2012 | 386 | 2012 |
TERT promoter mutations and telomerase reactivation in urothelial cancer S Borah, L Xi, AJ Zaug, NM Powell, GM Dancik, SB Cohen, JC Costello, ... Science 347 (6225), 1006-1010, 2015 | 340 | 2015 |
Monocytic subclones confer resistance to venetoclax-based therapy in patients with acute myeloid leukemia S Pei, DA Pollyea, A Gustafson, BM Stevens, M Minhajuddin, R Fu, ... Cancer discovery 10 (4), 536-551, 2020 | 327 | 2020 |
Tumor-derived cell lines as molecular models of cancer pharmacogenomics A Goodspeed, LM Heiser, JW Gray, JC Costello Molecular Cancer Research 14 (1), 3-13, 2016 | 323 | 2016 |
A community computational challenge to predict the activity of pairs of compounds M Bansal, J Yang, C Karan, MP Menden, JC Costello, H Tang, G Xiao, ... Nature biotechnology 32 (12), 1213-1222, 2014 | 323 | 2014 |
Intrathymic programming of effector fates in three molecularly distinct γδ T cell subtypes K Narayan, KE Sylvia, N Malhotra, CC Yin, G Martens, T Vallerskog, ... Nature immunology 13 (5), 511-518, 2012 | 220 | 2012 |
GSEA-InContext: identifying novel and common patterns in expression experiments RK Powers, A Goodspeed, H Pielke-Lombardo, AC Tan, JC Costello Bioinformatics 34 (13), i555-i564, 2018 | 183 | 2018 |
Crowdsourcing biomedical research: leveraging communities as innovation engines J Saez-Rodriguez, JC Costello, SH Friend, MR Kellen, L Mangravite, ... Nature Reviews Genetics 17 (8), 470-486, 2016 | 168 | 2016 |
Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open … J Guinney, T Wang, TD Laajala, KK Winner, JC Bare, EC Neto, SA Khan, ... The Lancet Oncology 18 (1), 132-142, 2017 | 161 | 2017 |
“Reverse ecology” and the power of population genomics YF Li, JC Costello, AK Holloway, MW Hahn Evolution 62 (12), 2984-2994, 2008 | 150 | 2008 |
Concurrent alterations in TERT, KDM6A, and the BRCA pathway in bladder cancer ML Nickerson, GM Dancik, KM Im, MG Edwards, S Turan, J Brown, ... Clinical Cancer Research 20 (18), 4935-4948, 2014 | 128 | 2014 |
Transcriptomes of the B and T lineages compared by multiplatform microarray profiling MW Painter, S Davis, RR Hardy, D Mathis, C Benoist, Y Zhou, S Shinton, ... The Journal of Immunology 186 (5), 3047-3057, 2011 | 125 | 2011 |
Transcriptome analysis identifies regulators of hematopoietic stem and progenitor cells R Gazit, BS Garrison, TN Rao, T Shay, J Costello, J Ericson, F Kim, ... Stem cell reports 1 (3), 266-280, 2013 | 115 | 2013 |
Inhibition of the CCL2 receptor, CCR2, enhances tumor response to immune checkpoint therapy MM Tu, HA Abdel-Hafiz, RT Jones, A Jean, KJ Hoff, JE Duex, ... Communications Biology 3 (1), 720, 2020 | 111 | 2020 |