| Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility PSG Chain, VJ Denef, KT Konstantinidis, LM Vergez, L Agulló, VL Reyes, ... Proceedings of the National Academy of Sciences 103 (42), 15280-15287, 2006 | 418 | 2006 |
| Functional analysis of natural microbial consortia using community proteomics NC VerBerkmoes, VJ Denef, RL Hettich, JF Banfield Nature Reviews Microbiology 7 (3), 196-205, 2009 | 303 | 2009 |
| Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria I Lo, VJ Denef, NC VerBerkmoes, MB Shah, D Goltsman, G DiBartolo, ... Nature 446 (7135), 537-541, 2007 | 265 | 2007 |
| Giant virus diversity and host interactions through global metagenomics F Schulz, S Roux, D Paez-Espino, S Jungbluth, DA Walsh, VJ Denef, ... Nature 578 (7795), 432-436, 2020 | 250 | 2020 |
| Strain-resolved community genomic analysis of gut microbial colonization in a premature infant MJ Morowitz, VJ Denef, EK Costello, BC Thomas, V Poroyko, DA Relman, ... Proceedings of the National Academy of Sciences 108 (3), 1128-1133, 2011 | 239 | 2011 |
| AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature VJ Denef, RS Mueller, JF Banfield The ISME journal 4 (5), 599-610, 2010 | 227 | 2010 |
| IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses D Paez-Espino, IMA Chen, K Palaniappan, A Ratner, K Chu, E Szeto, ... Nucleic acids research 45 (D1), gkw1030, 2016 | 216 | 2016 |
| Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing “Leptospirillum rubarum”(Group II) and “Leptospirillum ferrodiazotrophum”(Group III) bacteria in … DSA Goltsman, VJ Denef, SW Singer, NC VerBerkmoes, M Lefsrud, ... Applied and environmental microbiology 75 (13), 4599-4615, 2009 | 215 | 2009 |
| Cyanobacterial harmful algal blooms are a biological disturbance to Western Lake Erie bacterial communities MA Berry, TW Davis, RM Cory, MB Duhaime, TH Johengen, GW Kling, ... Environmental microbiology 19 (3), 1149-1162, 2017 | 196 | 2017 |
| Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities VJ Denef, LH Kalnejais, RS Mueller, P Wilmes, BJ Baker, BC Thomas, ... Proceedings of the National Academy of Sciences 107 (6), 2383-2390, 2010 | 189 | 2010 |
| Biphenyl and Benzoate Metabolism in a Genomic Context: Outlining Genome-Wide Metabolic Networks in Burkholderia xenovorans LB400 VJ Denef, J Park, TV Tsoi, JM Rouillard, H Zhang, JA Wibbenmeyer, ... Applied and Environmental Microbiology 70 (8), 4961-4970, 2004 | 161 | 2004 |
| Population Genomic Analysis of Strain Variation in Leptospirillum Group II Bacteria Involved in Acid Mine Drainage Formation SL Simmons, G DiBartolo, VJ Denef, DSA Goltsman, MP Thelen, ... PLoS biology 6 (7), e177, 2008 | 157 | 2008 |
| Persisting viral sequences shape microbial CRISPR-based immunity AD Weinberger, CL Sun, MM Pluciński, VJ Denef, BC Thomas, P Horvath, ... PLoS computational biology 8 (4), e1002475, 2012 | 155 | 2012 |
| Genetic and Genomic Insights into the Role of Benzoate-Catabolic Pathway Redundancy in Burkholderia xenovorans LB400 VJ Denef, JA Klappenbach, MA Patrauchan, C Florizone, JLM Rodrigues, ... Applied and Environmental Microbiology 72 (1), 585-595, 2006 | 130 | 2006 |
| The dynamic genetic repertoire of microbial communities P Wilmes, SL Simmons, VJ Denef, JF Banfield FEMS microbiology reviews 33 (1), 109-132, 2008 | 126 | 2008 |
| Growth Substrate- and Phase-Specific Expression of Biphenyl, Benzoate, and C1 Metabolic Pathways in Burkholderia xenovorans LB400 VJ Denef, MA Patrauchan, C Florizone, J Park, TV Tsoi, W Verstraete, ... Journal of bacteriology 187 (23), 7996-8005, 2005 | 126 | 2005 |
| Expansion of the global RNA virome reveals diverse clades of bacteriophages U Neri, YI Wolf, S Roux, AP Camargo, B Lee, D Kazlauskas, IM Chen, ... Cell 185 (21), 4023-4037. e18, 2022 | 121 | 2022 |
| Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communities VJ Denef, J Park, JLM Rodrigues, TV Tsoi, SA Hashsham, JM Tiedje Environmental Microbiology 5 (10), 933-943, 2003 | 121 | 2003 |
| In situ evolutionary rate measurements show ecological success of recently emerged bacterial hybrids VJ Denef, JF Banfield Science 336 (6080), 462-466, 2012 | 114 | 2012 |
| Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea AP Yelton, LR Comolli, NB Justice, C Castelle, VJ Denef, BC Thomas, ... BMC genomics 14, 1-15, 2013 | 100 | 2013 |
Jillian BANFIELDUniversity of California Berkeley在 berkeley.edu 的电子邮件经过验证
