Detecting early-warning signals for sudden deterioration of complex diseases by dynamical network biomarkers L Chen, R Liu, ZP Liu, M Li, K Aihara Scientific reports 2 (1), 342, 2012 | 564 | 2012 |
RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity E Pefanis, J Wang, G Rothschild, J Lim, D Kazadi, J Sun, A Federation, ... Cell 161 (4), 774-789, 2015 | 450 | 2015 |
RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse ZP Liu, C Wu, H Miao, H Wu Database 2015, bav095, 2015 | 402 | 2015 |
Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information X Zhang, XM Zhao, K He, L Lu, Y Cao, J Liu, JK Hao, ZP Liu, L Chen Bioinformatics 28 (1), 98-104, 2012 | 353 | 2012 |
Type 1 interferons induce changes in core metabolism that are critical for immune function D Wu, DE Sanin, B Everts, Q Chen, J Qiu, MD Buck, A Patterson, ... Immunity 44 (6), 1325-1336, 2016 | 291 | 2016 |
Multiple-resource and multiple-depot emergency response problem considering secondary disasters JH Zhang, J Li, ZP Liu Expert Systems with Applications 39 (12), 11066-11071, 2012 | 199 | 2012 |
Identifying critical transitions and their leading biomolecular networks in complex diseases R Liu, M Li, ZP Liu, J Wu, L Chen, K Aihara Scientific reports 2 (1), 813, 2012 | 180 | 2012 |
Prediction of protein–RNA binding sites by a random forest method with combined features ZP Liu, LY Wu, Y Wang, XS Zhang, L Chen Bioinformatics 26 (13), 1616-1622, 2010 | 177 | 2010 |
NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference X Zhang, K Liu, ZP Liu, B Duval, JM Richer, XM Zhao, JK Hao, L Chen Bioinformatics 29 (1), 106-113, 2013 | 156 | 2013 |
Identifying dysregulated pathways in cancers from pathway interaction networks KQ Liu, ZP Liu, JK Hao, L Chen, XM Zhao BMC bioinformatics 13, 1-11, 2012 | 134 | 2012 |
NOA: a novel Network Ontology Analysis method J Wang, Q Huang, ZP Liu, Y Wang, LY Wu, L Chen, XS Zhang Nucleic acids research 39 (13), e87-e87, 2011 | 124 | 2011 |
Prevention of aortic dissection and aneurysm via an ALDH2-mediated switch in vascular smooth muscle cell phenotype K Yang, J Ren, X Li, Z Wang, L Xue, S Cui, W Sang, T Xu, J Zhang, J Yu, ... European heart journal 41 (26), 2442-2453, 2020 | 122 | 2020 |
De novo prediction of RNA–protein interactions from sequence information Y Wang, X Chen, ZP Liu, Q Huang, Y Wang, D Xu, XS Zhang, R Chen, ... Molecular BioSystems 9 (1), 133-142, 2013 | 116 | 2013 |
Identifying disease genes and module biomarkers by differential interactions X Liu, ZP Liu, XM Zhao, L Chen Journal of the American Medical Informatics Association 19 (2), 241-248, 2012 | 116 | 2012 |
Coexpression network analysis in chronic hepatitis B and C hepatic lesions reveals distinct patterns of disease progression to hepatocellular carcinoma D He, ZP Liu, M Honda, S Kaneko, L Chen Journal of molecular cell biology 4 (3), 140-152, 2012 | 108 | 2012 |
Network-based analysis of complex diseases ZP Liu, Y Wang, XS Zhang, L Chen IET Systems Biology 6 (1), 22-33, 2012 | 99 | 2012 |
Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains ZP Liu, Y Wang, XS Zhang, L Chen BMC systems biology 4, 1-12, 2010 | 97 | 2010 |
Reverse engineering of genome-wide gene regulatory networks from gene expression data ZP Liu Current genomics 16 (1), 3-22, 2015 | 89 | 2015 |
High-resolution temporal response patterns to influenza vaccine reveal a distinct human plasma cell gene signature AD Henn, S Wu, X Qiu, M Ruda, M Stover, H Yang, Z Liu, SL Welle, ... Scientific reports 3 (1), 2327, 2013 | 76 | 2013 |
Prediction of hot spots in protein interfaces using a random forest model with hybrid features L Wang, ZP Liu, XS Zhang, L Chen Protein Engineering, Design & Selection 25 (3), 119-126, 2012 | 76 | 2012 |