| WHY IS GENOMIC IMPRINTING DYSREGULATED DURING REPROGRAMMING OF IPSCS? M Arez, M Gouveia, A Raposo, F Krueger, A Mupo, M Eckersley-Maslin, ... WOUND REPAIR AND REGENERATION 31, S36-S37, 2023 | | 2023 |
| Intra-and interchromosomal contact mapping reveals the Igh locus has extensive conformational heterogeneity and interacts with B-lineage genes O Mielczarek, CH Rogers, Y Zhan, LS Matheson, MJT Stubbington, ... Cell Reports 42 (9), 2023 | | 2023 |
| Single cell DNA methylation ageing in mouse blood MJ Bonder, SJ Clark, F Krueger, S Luo, JA de Sousa, AM Hashtroud, ... bioRxiv, 2023.01. 30.526343, 2023 | 1 | 2023 |
| Genome-wide assessment of DNA methylation alterations induced by superovulation, sexual immaturity and in vitro follicle growth in mouse blastocysts L Saucedo-Cuevas, E Ivanova, AC Herta, F Krueger, K Billooye, J Smitz, ... Clinical Epigenetics 15 (1), 9, 2023 | 2 | 2023 |
| NANOGP1, a tandem duplicate of NANOG, exhibits partial functional conservation in human naïve pluripotent stem cells K Maskalenka, G Alagöz, F Krueger, J Wright, M Rostovskaya, A Nakhuda, ... Development 150 (2), dev201155, 2023 | 1 | 2023 |
| Stability of genomic imprinting and X-chromosome inactivation in the aging brain S Mancino, J Seneviratne, A Mupo, F Krueger, D Oxley, ... bioRxiv, 2023.09. 29.560184, 2023 | 2 | 2023 |
| Single-cell multi-omics profiling links dynamic DNA methylation to cell fate decisions during mouse early organogenesis SJ Clark, R Argelaguet, T Lohoff, F Krueger, D Drage, B Göttgens, ... Genome biology 23 (1), 202, 2022 | 16 | 2022 |
| Imprinting fidelity in mouse iPSCs depends on sex of donor cell and medium formulation M Arez, M Eckersley-Maslin, T Klobučar, J von Gilsa Lopes, F Krueger, ... Nature Communications 13 (1), 5432, 2022 | 6 | 2022 |
| Pronounced sequence specificity of the TET enzyme catalytic domain guides its cellular function M Ravichandran, D Rafalski, CI Davies, O Ortega-Recalde, X Nan, ... Science Advances 8 (36), eabm2427, 2022 | 11 | 2022 |
| Decoding gene regulation in the mouse embryo using single-cell multi-omics R Argelaguet, T Lohoff, JG Li, A Nakhuda, D Drage, F Krueger, L Velten, ... BioRxiv, 2022.06. 15.496239, 2022 | 29 | 2022 |
| Single-cell Atlas of common variable immunodeficiency shows germinal center-associated epigenetic dysregulation in B-cell responses J Rodríguez-Ubreva, A Arutyunyan, MJ Bonder, L Del Pino-Molina, ... Nature communications 13 (1), 1779, 2022 | 29 | 2022 |
| 8C-like cells capture the human zygotic genome activation program in vitro J Taubenschmid-Stowers, M Rostovskaya, F Santos, S Ljung, ... Cell stem cell 29 (3), 449-459. e6, 2022 | 84 | 2022 |
| Stimulation of adaptive gene amplification by origin firing under replication fork constraint AJ Whale, M King, RM Hull, F Krueger, J Houseley Nucleic Acids Research 50 (2), 915-936, 2022 | 14 | 2022 |
| Gene regulatory network inference in long-lived C. elegans reveals modular properties that are predictive of novel aging genes M Suriyalaksh, C Raimondi, A Mains, A Segonds-Pichon, S Mukhtar, ... Iscience 25 (1), 2022 | 4 | 2022 |
| The distinct effects of MEK and GSK3 inhibition upon the methylome and transcriptome of mouse embryonic stem cells J Spindel, C Krueger, F Krueger, EK Papachristou, K Kishore, ... bioRxiv, 2021.11. 18.469000, 2021 | 2 | 2021 |
| Modelling human zygotic genome activation in 8C-like cells in vitro J Taubenschmid-Stowers, M Rostovskaya, F Santos, S Ljung, ... bioRxiv, 2021.10. 28.466259, 2021 | 3 | 2021 |
| FastQC: a quality control tool for high throughput sequence data [Internet]. 2010 S Andrews | 106 | 2021 |
| Genome-wide analysis of DNA replication and DNA double-strand breaks using TrAEL-seq N Kara, F Krueger, P Rugg-Gunn, J Houseley PLoS biology 19 (3), e3000886, 2021 | 25 | 2021 |
| Histone modifications form a cell-type-specific chromosomal bar code that persists through the cell cycle JA Halsall, S Andrews, F Krueger, CE Rutledge, G Ficz, W Reik, ... Scientific reports 11 (1), 3009, 2021 | 15 | 2021 |
| TrimGalore: v0. 6.7 F Krueger, F James, P Ewels, E Afyounian, BFK Schuster-Boeckler Zenodo https://zenodo. org/record/5127899 (Accessed February 23, 2022), 2021 | 63 | 2021 |
