Identification of Neurotransmission and Synaptic Biological Processes Disrupted in Autism Spectrum Disorder Using Interaction Networks and Community Detection Analysis J Vilela, H Martiniano, AR Marques, JX Santos, M Asif, C Rasga, ... Biomedicines 11 (11), 2971, 2023 | | 2023 |
Machine learning for synergistic network pharmacology: a comprehensive overview F Noor, M Asif, UA Ashfaq, M Qasim, M Tahir ul Qamar Briefings in Bioinformatics, bbad120, 2023 | 37 | 2023 |
scRNAseq_KNIME workflow: A Customizable, Locally Executable, Interactive and Automated KNIME workflow for single-cell RNA seq S Kausar, M Asif, A Baudot bioRxiv, 2023.01. 14.524084, 2023 | | 2023 |
ShIVA, a user-friendly and interactive interface giving biologists control over their single-cell RNA-seq data. R Aussel, M Asif, S Chenag, S Jaeger, P Milpied, L Spinelli bioRxiv, 2022.09. 20.508636, 2022 | 4 | 2022 |
Comprehensive computational analysis reveals YXXΦ [I/L/M/F/V] motif and YXXΦ-like tetrapeptides across HFRS causing Hantaviruses and their association with viral pathogenesis … F Noor, U Ashfaq, M Asif, M Adeel, A Alshammari, M Alharbi Frontiers in immunology 13, 2022 | 4 | 2022 |
Biomedical knowledge graph embeddings for personalized medicine: Predicting disease-gene associations H Vilela, J. Asif, M. Marques, AR. Santos, JX. Rasga, C. Vicente, A. Martiniano Expert Systems, 2022 | 11* | 2022 |
DGH-GO: Dissecting the Genetic Heterogeneity of complex diseases using Gene Ontology M Asif, H Martiniano, A Lamurias, S Kausar, F Couto bioRxiv, 2022 | 1 | 2022 |
A Role for Gene-Environment Interactions in Autism Spectrum Disorder Is Supported by Variants in Genes Regulating the Effects of Exposure to Xenobiotics JX Santos, C Rasga, AR Marques, H Martiniano, M Asif, J Vilela, ... Frontiers in Neuroscience 16, 2022 | 19 | 2022 |
Light-emitting diodes effect on Aspergillus species in filtered surface water: DNA damage, proteome response and potential reactivation BR Oliveira, AP Marques, M Asif, MTB Crespo, VJ Pereira Environmental Pollution 287, 117553, 2021 | 5 | 2021 |
Biomedical Knowledge Graph Embeddings for Personalized Medicine J Vilela, M Asif, AR Marques, JX Santos, C Rasga, A Vicente, ... EPIA Conference on Artificial Intelligence, 584-595, 2021 | 1 | 2021 |
Identification of biological mechanisms underlying a multidimensional ASD phenotype using machine learning M Asif, HFMC Martiniano, AR Marques, JX Santos, J Vilela, C Rasga, ... Translational psychiatry 10 (1), 1-12, 2020 | 26 | 2020 |
Network propagation-based semi-supervised identification of genes associated with autism spectrum disorder HFMC Martiniano, M Asif, AM Vicente, L Correia International Meeting on Computational Intelligence Methods for …, 2020 | 4 | 2020 |
FunVar: A systematic pipeline to unravel the convergence patterns of genetic variants in ASD, a paradigmatic complex disease M Asif, AM Vicente, FM Couto Journal of biomedical informatics 98, 103273, 2019 | 4 | 2019 |
Establishing genotype-phenotype associations for ASD ACG Ilheu, M Asif, FM Couto EUROPEAN JOURNAL OF HUMAN GENETICS 27, 1422-1423, 2019 | | 2019 |
An integrative approach to correlate clinical presentation patterns in Autism Spectrum Disorder with biological processes disrupted by Copy Number Variants (CNV) in brain genes M Asif, H Martiniano, C Rasga, AR Marques, JX Santos, G Oliveira, ... EUROPEAN JOURNAL OF HUMAN GENETICS 27, 569-569, 2019 | | 2019 |
Autism Spectrum Disorder: gene variants involved in the nonsense-mediated mRNA decay pathway AR Marques, H Martiniano, JX Santos, J Vilela, M Asif, C Rasga, ... 52nd European Human Genetics (ESHG) Conference, 15-18 June 2019, 2019 | | 2019 |
Adapting the ELEAT (Early Life Exposure Assessment Tool) to Portugal–a pilot study to tackle gene-environment interactions in Autism Spectrum Disorder C Rasga, ALLJX Santos, AR Marques, J Vilela, M Asif, G Oliveira, ... bioRxiv, 520593, 2019 | | 2019 |
Identification of disease risk variants in neurotransmission and synaptic genes in Autism Spectrum Disorder J Vilela, H Martiniano, S Luzia, AR Marques, J Santos, M Asif, C Rasga, ... XVI Meeting of the Portuguese Society for Neurosciences, 30 maio-1 junho 2019, 2019 | | 2019 |
Identifying disease genes using machine learning and gene functional similarities, assessed through Gene Ontology M Asif, HF Martiniano, AM Vicente, FM Couto PloS one 13 (12), e0208626, 2018 | 89 | 2018 |
Evidence for a role of nonsense-mediated mRNA decay pathway genes in Autism Spectrum Disorder A Marques, H Martiniano, JX Santos, J Vilela, M Asif, G Oliveira, L Romão, ... 22ª Reunião Anual da Sociedade Portuguesa de Genética Humana, 15-17 novembro …, 2018 | | 2018 |