| Characterization of telomere variant repeats using long reads enables allele-specific telomere length estimation Z Stephens, JP Kocher BMC bioinformatics 25 (1), 194, 2024 | | 2024 |
| Methods and materials for the effective use of combined targeted enrichment of genomic regions and low coverage whole genome sequencing JPA Kocher, C Wang US Patent 11,981,962, 2024 | | 2024 |
| Immunopipe: A comprehensive and flexible scRNA-seq and scTCR-seq data analysis pipeline P Wang, Y Yu, H Dong, S Zhang, Z Sun, H Zeng, P Mondello, JP Kocher, ... bioRxiv, 2024.05. 14.594248, 2024 | | 2024 |
| Experimental and Computational Approaches to Measure Telomere Length: Recent Advances and Future Directions A Ferrer, ZD Stephens, JPA Kocher Current Hematologic Malignancy Reports 18 (6), 284-291, 2023 | 1 | 2023 |
| Distribution of Chromosome-Arm Specific Telomere Length in Patients with Telomere Biology Disorders A Ferrer, ZD Stephens, SM Geyer, RA Simon, TL Lasho, CM Finke, ... Blood 142, 4103, 2023 | | 2023 |
| TELOMERE LENGTH IS SIGNIFICANTLY REDUCED IN ALCOHOL-ASSOCIATED HEPATITIS COMPARED TO ALCOHOLASSOCIATED CIRRHOSIS AND HEAVY DRINKERS WITHOUT LIVER DISEASE D Penrice, N Jalan-Sakrikar, P Rattan, KS Hara, BS Chara, T Sehrawat, ... HEPATOLOGY 78, S1651-S1652, 2023 | | 2023 |
| PRECISION THERAPY IN HEPATOCELLULAR CARCINOMA: ASSOCIATION OF FGF3, FGF4, AND FGF19 AMPLIFICATION WITH RESPONSE TO SORAFENIB H Hassan, MAM Ali, D O'Brien, F Hassan, A Tadakamalla, W Taha, ... HEPATOLOGY 78, S1869-S1870, 2023 | | 2023 |
| Activation of homology-directed DNA repair plays key role in CRISPR-mediated genome correction G Mondal, CJ VanLith, CT Nicolas, WS Thompson, WS Cao, L Hillin, ... Gene Therapy 30 (3), 386-397, 2023 | | 2023 |
| CRISPR/Cas9-mediated excision of ALS/FTD-causing hexanucleotide repeat expansion in C9ORF72 rescues major disease mechanisms in vivo and in vitro KE Meijboom, A Abdallah, NP Fordham, H Nagase, T Rodriguez, C Kraus, ... Nature communications 13 (1), 6286, 2022 | 41 | 2022 |
| In vivo lentiviral vector gene therapy to cure hereditary tyrosinemia type 1 and prevent development of precancerous and cancerous lesions CT Nicolas, CJ VanLith, RD Hickey, Z Du, LG Hillin, RM Guthman, ... Nature communications 13 (1), 5012, 2022 | 12 | 2022 |
| DNA methylation signature predicts cancer response to demethylation agents from profiling diverse cancer cell lines Z Sun, X Wang, P Vedell, JP Kocher Cancer Communications 42 (8), 789, 2022 | 3 | 2022 |
| Telogator: a method for reporting chromosome-specific telomere lengths from long reads Z Stephens, A Ferrer, L Boardman, RK Iyer, JPA Kocher Bioinformatics 38 (7), 1788-1793, 2022 | 6 | 2022 |
| Quality performance of a transfer center reduces Interhospital transfer and direct admission-related ED evaluations S Pagali, JP Kocher, T Coons, K King, S Hansel, N Van Brunt, C Smith, ... American Journal of Medical Quality 37 (1), 14-21, 2022 | 2 | 2022 |
| Surface roughness of titanium orthopedic implants alters the biological phenotype of human mesenchymal stromal cells EA Lewallen, WH Trousdale, R Thaler, JJ Yao, W Xu, JM Denbeigh, ... Tissue Engineering Part A 27 (23-24), 1503-1516, 2021 | 17 | 2021 |
| Determining mutational burden and signature using RNA-seq from tumor-only samples E Jessen, Y Liu, J Davila, JP Kocher, C Wang BMC medical genomics 14, 1-9, 2021 | 6 | 2021 |
| Exogene: A performant workflow for detecting viral integrations from paired-end next-generation sequencing data Z Stephens, D O’Brien, M Dehankar, LR Roberts, RK Iyer, JP Kocher PloS one 16 (9), e0250915, 2021 | 3 | 2021 |
| PB-Motif—A Method for Identifying Gene/Pseudogene Rearrangements With Long Reads: An Application to CYP21A2 Genotyping Z Stephens, D Milosevic, B Kipp, S Grebe, RK Iyer, JPA Kocher Frontiers in Genetics 12, 716586, 2021 | 5 | 2021 |
| P2T2: Protein Panoramic annoTation Tool for the interpretation of protein coding genetic variants E DeVoe, GR Oliver, R Zenka, PR Blackburn, MA Cousin, NJ Boczek, ... JAMIA open 4 (3), ooab065, 2021 | 2 | 2021 |
| Re-evaluate fusion genes in prostate cancer T Wei, J Lu, T Ma, H Huang, JP Kocher, L Wang Cancer Informatics 20, 11769351211027592, 2021 | 8 | 2021 |
| Elevated expression of plasminogen activator inhibitor (PAI-1/SERPINE1) is independent from rs1799889 genotypes in arthrofibrosis B Bayram, AR Owen, A Dudakovic, JW Bettencourt, AK Limberg, ... Meta gene 28, 100877, 2021 | 1 | 2021 |
