Nucleic acid probe and nucleic acid sequencing method LIU Erkai, W Zhang, A Chen, C Xu US Patent 11,993,813, 2024 | | 2024 |
A spatiotemporal atlas of mouse liver homeostasis and regeneration J Xu, P Guo, S Hao, S Shangguan, Q Shi, G Volpe, K Huang, J Zuo, J An, ... Nature Genetics, 1-17, 2024 | | 2024 |
A spatiotemporal atlas of cholestatic injury and repair in mice B Wu, X Shentu, H Nan, P Guo, S Hao, J Xu, S Shangguan, L Cui, J Cen, ... Nature Genetics, 1-15, 2024 | 1 | 2024 |
Unsupervised spatially embedded deep representation of spatial transcriptomics H Xu, H Fu, Y Long, KS Ang, R Sethi, K Chong, M Li, R Uddamvathanak, ... Genome Medicine 16 (1), 12, 2024 | 99 | 2024 |
Spatially organized tumor-stroma boundary determines the efficacy of immunotherapy in colorectal cancer patients R Zhang, Y Feng, W Ma, Y Zang, Y Guo, Y Li, Y Zhang, X Dong, Y Liu, ... | | 2024 |
STOmicsDB: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization Z Xu, W Wang, T Yang, L Li, X Ma, J Chen, J Wang, Y Huang, J Gould, ... Nucleic Acids Research 52 (D1), D1053-D1061, 2024 | 21 | 2024 |
SCIITensor: A tensor decomposition based algorithm to construct actionable TME modules with spatially resolved intercellular communications H Huang, C Liu, X Liu, J Tian, F Xi, M Li, G Li, A Chen, X Xu, S Liao, ... bioRxiv, 2024.05. 21.595103, 2024 | | 2024 |
StereoMM: A Graph Fusion Model for Integrating Spatial Transcriptomic Data and Pathological Images B Luo, F Teng, G Tang, W Chen, C Qu, X Liu, X Liu, X Liu, H Huang, ... bioRxiv, 2024.05. 04.592486, 2024 | | 2024 |
SAW: An efficient and accurate data analysis workflow for Stereo-seq spatial transcriptomics C Gong, S Li, L Wang, F Zhao, S Fang, D Yuan, Z Zhao, Q He, M Li, W Liu, ... GigaByte 2024, 2024 | 2 | 2024 |
Spatiotemporal transcriptomic profiling reveals the dynamic immunological landscape of alveolar echinococcosis Z Ou, L Li, P Ren, T Zhou, F He, J Chen, H Cai, X Han, Y Wu, J Li, X Li, ... bioRxiv, 2024.04. 04.577902, 2024 | | 2024 |
IFNγ Transcribed by IRF1 in CD4+ Effector Memory T Cells Promotes Senescence-Associated Pulmonary Fibrosis H Chen, Q Wang, J Li, Y Li, A Chen, J Zhou, J Zhao, Z Mao, Z Zhou, ... Aging and Disease 14 (6), 2215, 2023 | 1 | 2023 |
Single cell multi-omics reveal intra-cell-line heterogeneity across human cancer cell lines Q Zhu, X Zhao, Y Zhang, Y Li, S Liu, J Han, Z Sun, C Wang, D Deng, ... Nature Communications 14 (1), 8170, 2023 | 8 | 2023 |
Dbh+ catecholaminergic cardiomyocytes contribute to the structure and function of the cardiac conduction system in murine heart T Sun, A Grassam-Rowe, Z Pu, Y Li, H Ren, Y An, X Guo, W Hu, Y Liu, ... Nature communications 14 (1), 7801, 2023 | 2 | 2023 |
Single-cell spatial transcriptome reveals cell-type organization in the macaque cortex A Chen, Y Sun, Y Lei, C Li, S Liao, J Meng, Y Bai, Z Liu, Z Liang, Z Zhu, ... Cell 186 (17), 3726-3743. e24, 2023 | 46 | 2023 |
spatiAlign: an unsupervised contrastive learning model for data integration of spatially resolved transcriptomics C Zhang, L Liu, Y Zhang, M Li, S Fang, Q Kang, A Chen, X Xu, Y Zhang, ... Biorxiv, 2023.08. 08.552402, 2023 | 3 | 2023 |
Method for sequencing polynucleotides based on optical signal kinetics of luminescent labels and secondary luminescent signals X Chen, S Liao, W Zhang, A Chen, J Zhao US Patent App. 17/636,746, 2023 | | 2023 |
An invasive zone in human liver cancer identified by Stereo-seq promotes hepatocyte–tumor cell crosstalk, local immunosuppression and tumor progression L Wu, J Yan, Y Bai, F Chen, X Zou, J Xu, A Huang, L Hou, Y Zhong, Z Jing, ... Cell research 33 (8), 585-603, 2023 | 25 | 2023 |
Spatial transcriptome unveils a discontinuous inflammatory pattern in proficient mismatch repair colorectal adenocarcinoma R Zhang, Y Feng, W Ma, Y Guo, M Luo, Y Li, Y Zang, X Dong, S Lu, Q Guo, ... Fundamental Research 3 (4), 640-646, 2023 | 11 | 2023 |
Array and method for detecting spatial information of nucleic acids A Chen, X Xu, S Liao, J Yang, LIU Longqi, O Wang, Y Li, G Tang, Y Jiang, ... US Patent App. 17/611,099, 2023 | | 2023 |
Deciphering spatial domains from spatial multi-omics with SpatialGlue Y Long, KS Ang, S Liao, R Sethi, Y Heng, C Zhong, XU Hang, N Husna, ... | 1 | 2023 |