Systematic analysis of nonsense variants uncovers peptide release rate as a novel modifier of nonsense-mediated mRNA decay efficiency D Kolakada, R Fu, N Biziaev, A Shuvalov, M Lore, AE Campbell, ... bioRxiv, 2024 | | 2024 |
PDGFRα signaling regulates Srsf3 transcript binding to affect PI3K signaling and endosomal trafficking TE Forman, MP Sajek, ED Larson, N Mukherjee, KA Fantauzzo bioRxiv, 2024 | | 2024 |
Ribosome Profiling Reveals Translational Reprogramming via mTOR Activation in Omacetaxine Resistant Multiple Myeloma ZJ Walker, KF Vaeth, A Baldwin, DJ Ohlstrom, LT Reiman, BM Idler, ... bioRxiv, 2024.04. 23.590843, 2024 | | 2024 |
In Situ Reconstruction Of Distinct Normal And Pathological Cell Populations Within The Human Adrenal Gland Using Spatial Transcriptomics F Rui, K Walters, K Koc, A Baldwin, K Kiseljak-Vassiliades, LM Fishbein, ... Journal of the Endocrine Society 7 (Supplement_1), bvad114. 156, 2023 | | 2023 |
Small-molecule Ro-08-2750 interacts with many RNA-binding proteins and elicits MUSASHI2-independent phenotypes K Walters, MP Sajek, E Murphy, A Issaian, A Baldwin, E Harrison, ... RNA 29 (10), 1458-1470, 2023 | | 2023 |
Transcriptomic response dynamics of human primary and immortalized adrenocortical cells to steroidogenic stimuli K Wellman, R Fu, A Baldwin, J Rege, E Murphy, WE Rainey, N Mukherjee Cells 10 (9), 2376, 2021 | 8 | 2021 |
RNA-binding proteins regulate aldosterone homeostasis in human steroidogenic cells R Fu, K Wellman, A Baldwin, J Rege, K Walters, A Hirsekorn, K Riemondy, ... RNA 27 (8), 933-945, 2021 | 6 | 2021 |
An Easy, Cost‐Effective, and Scalable Method to Deplete Human Ribosomal RNA for RNA‐seq A Baldwin, AR Morris, N Mukherjee Current Protocols 1 (6), e176, 2021 | 15* | 2021 |
ELAVL1 primarily couples mRNA stability with the 3′ UTRs of interferon-stimulated genes K Rothamel, S Arcos, B Kim, C Reasoner, S Lisy, N Mukherjee, M Ascano Cell reports 35 (8), 2021 | 48 | 2021 |
Towards a deeper annotation of human lncRNAs MW Szcześniak, E Wanowska, N Mukherjee, U Ohler, I Makałowska Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1863 (4), 194385, 2020 | 13 | 2020 |
Global identification of functional microRNA-mRNA interactions in Drosophila HH Wessels, S Lebedeva, A Hirsekorn, R Wurmus, A Akalin, N Mukherjee, ... Nature communications 10 (1), 1626, 2019 | 48 | 2019 |
Deciphering human ribonucleoprotein regulatory networks N Mukherjee, HH Wessels, S Lebedeva, M Sajek, M Ghanbari, A Garzia, ... Nucleic acids research 47 (2), 570-581, 2019 | 61 | 2019 |
SSMART: sequence-structure motif identification for RNA-binding proteins A Munteanu, N Mukherjee, U Ohler Bioinformatics 34 (23), 3990-3998, 2018 | 22 | 2018 |
Long non-coding RNAs as modulators of splicing in trans via direct RNA: RNA interactions MW Szczesniak, E Wanowska, M Kubiak, N Mukherjee, U Ohler, ... Acta Biochimica Polonica 65 (S2), 2018 | | 2018 |
Characteristics of human lncRNA transcripts across cell lines M Szczesniak, N Mukherjee, O Bryzghalov, U Ohler, I Makalowska FEBS JOURNAL 284, 171-171, 2017 | | 2017 |
DDX54 regulates transcriptome dynamics during DNA damage response M Milek, K Imami, N Mukherjee, F De Bortoli, U Zinnall, O Hazapis, ... Genome research 27 (8), 1344-1359, 2017 | 59 | 2017 |
Integrative classification of human coding and noncoding genes through RNA metabolism profiles N Mukherjee, L Calviello, A Hirsekorn, S de Pretis, M Pelizzola, U Ohler Nature structural & molecular biology 24 (1), 86-96, 2017 | 175 | 2017 |
Delivery of therapeutics targeting the mRNA-binding protein HuR using 3DNA nanocarriers suppresses ovarian tumor growth YH Huang, W Peng, N Furuuchi, J Gerhart, K Rhodes, N Mukherjee, ... Cancer research 76 (6), 1549-1559, 2016 | 93 | 2016 |
Detecting actively translated open reading frames in ribosome profiling data L Calviello, N Mukherjee, E Wyler, H Zauber, A Hirsekorn, M Selbach, ... Nature methods 13 (2), 165-170, 2016 | 401 | 2016 |
Identifying RBP targets with RIP-seq HH Wessels, A Hirsekorn, U Ohler, N Mukherjee Post-Transcriptional Gene Regulation, 141-152, 2016 | 12 | 2016 |