tauFisher predicts circadian time from a single sample of bulk and single-cell pseudobulk transcriptomic data J Duan, MN Ngo, SS Karri, LC Tsoi, JE Gudjonsson, B Shahbaba, ... Nature Communications 15 (1), 3840, 2024 | 1 | 2024 |
BiLO: Bilevel Local Operator Learning for PDE inverse problems RZ Zhang, X Xie, J Lowengrub arXiv preprint arXiv:2404.17789, 2024 | 1 | 2024 |
Individualizing glioma radiotherapy planning by optimization of a data and physics informed discrete loss M Balcerak, I Ezhov, P Karnakov, S Litvinov, P Koumoutsakos, J Weidner, ... arXiv preprint arXiv:2312.05063, 2023 | 2 | 2023 |
Personalized Predictions of Glioblastoma Infiltration: Mathematical Models, Physics-Informed Neural Networks and Multimodal Scans RZ Zhang, I Ezhov, M Balcerak, A Zhu, B Wiestler, B Menze, J Lowengrub ArXiv, 2023 | 2 | 2023 |
Phase field modeling and computation of vesicle growth or shrinkage X Tang, S Li, JS Lowengrub, SM Wise Journal of mathematical biology 86 (6), 97, 2023 | | 2023 |
Sharp-interface problem of the Ohta-Kawasaki model for symmetric diblock copolymers AK Barua, R Chew, S Li, J Lowengrub, A Münch, B Wagner Journal of Computational Physics 481, 112032, 2023 | 2 | 2023 |
A human vascularized microtumor model of patient-derived colorectal cancer recapitulates clinical disease SJ Hachey, A Sobrino, JG Lee, MD Jafari, SJ Klempner, EJ Puttock, ... Translational Research 255, 97-108, 2023 | 10 | 2023 |
Predictive nonlinear modeling of malignant myelopoiesis and tyrosine kinase inhibitor therapy J Rodriguez, A Iniguez, N Jena, P Tata, ZY Liu, AD Lander, J Lowengrub, ... Elife 12, e84149, 2023 | 3 | 2023 |
tauFisher accurately predicts circadian time from a single sample of bulk and single-cell transcriptomic data J Duan, MN Ngo, SS Karri, LC Tsoi, JE Gudjonsson, B Shahbaba, ... bioRxiv, 2023.04. 04.535473, 2023 | 2 | 2023 |
Three-dimensional numerical study on wrinkling of vesicles in elongation flow based on the immersed boundary method W Xiao, K Liu, J Lowengrub, S Li, M Zhao Physical Review E 107 (3), 035103, 2023 | 1 | 2023 |
PIEZO1 regulates leader cell formation and cellular coordination during collective cell migration: An integrative multiscale modeling and experimental study J Holt, J Chen, E Evans, J Lowengrub, MM Pathak Biophysical Journal 122 (3), 265a, 2023 | | 2023 |
The liver tumor segmentation benchmark (lits) P Bilic, P Christ, HB Li, E Vorontsov, A Ben-Cohen, G Kaissis, A Szeskin, ... Medical Image Analysis 84, 102680, 2023 | 1060 | 2023 |
Mathematical modeling of cancer immunotherapy for personalized clinical translation JD Butner, P Dogra, C Chung, R Pasqualini, W Arap, J Lowengrub, ... Nature computational science 2 (12), 785-796, 2022 | 15 | 2022 |
PIEZO1 regulates leader cell formation and cellular coordination during collective keratinocyte migration J Chen, JR Holt, EL Evans, JS Lowengrub, MM Pathak bioRxiv, 2022.10. 13.512181, 2022 | 2 | 2022 |
Tumor growth towards lower extracellular matrix conductivity regions under Darcy’s Law and steady morphology X Zheng, K Zhao, T Jackson, J Lowengrub Journal of mathematical biology 85 (1), 5, 2022 | 2 | 2022 |
Correction: Stress generation, relaxation and size control in confined tumor growth H Yan, D Ramirez-Guerrero, J Lowengrub, M Wu PLOS Computational Biology 18 (6), e1010288, 2022 | 2 | 2022 |
Nonlinear simulation of vascular tumor growth with chemotaxis and the control of necrosis MJ Lu, W Hao, C Liu, J Lowengrub, S Li Journal of Computational Physics 459, 111153, 2022 | 8 | 2022 |
Spatial dynamics of feedback and feedforward regulation in cell lineages P Uhl, J Lowengrub, N Komarova, D Wodarz PLoS computational biology 18 (5), e1010039, 2022 | 5 | 2022 |
Electrically controlled self-similar evolution of viscous fingering patterns PHA Anjos, M Zhao, J Lowengrub, S Li Physical Review Fluids 7 (5), 053903, 2022 | 12 | 2022 |
Modelling glioma progression, mass effect and intracranial pressure in patient anatomy J Lipková, B Menze, B Wiestler, P Koumoutsakos, JS Lowengrub Journal of the Royal Society Interface 19 (188), 20210922, 2022 | 10 | 2022 |