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john lowengrub
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tauFisher predicts circadian time from a single sample of bulk and single-cell pseudobulk transcriptomic data
J Duan, MN Ngo, SS Karri, LC Tsoi, JE Gudjonsson, B Shahbaba, ...
Nature Communications 15 (1), 3840, 2024
12024
BiLO: Bilevel Local Operator Learning for PDE inverse problems
RZ Zhang, X Xie, J Lowengrub
arXiv preprint arXiv:2404.17789, 2024
12024
Individualizing glioma radiotherapy planning by optimization of a data and physics informed discrete loss
M Balcerak, I Ezhov, P Karnakov, S Litvinov, P Koumoutsakos, J Weidner, ...
arXiv preprint arXiv:2312.05063, 2023
22023
Personalized Predictions of Glioblastoma Infiltration: Mathematical Models, Physics-Informed Neural Networks and Multimodal Scans
RZ Zhang, I Ezhov, M Balcerak, A Zhu, B Wiestler, B Menze, J Lowengrub
ArXiv, 2023
22023
Phase field modeling and computation of vesicle growth or shrinkage
X Tang, S Li, JS Lowengrub, SM Wise
Journal of mathematical biology 86 (6), 97, 2023
2023
Sharp-interface problem of the Ohta-Kawasaki model for symmetric diblock copolymers
AK Barua, R Chew, S Li, J Lowengrub, A Münch, B Wagner
Journal of Computational Physics 481, 112032, 2023
22023
A human vascularized microtumor model of patient-derived colorectal cancer recapitulates clinical disease
SJ Hachey, A Sobrino, JG Lee, MD Jafari, SJ Klempner, EJ Puttock, ...
Translational Research 255, 97-108, 2023
102023
Predictive nonlinear modeling of malignant myelopoiesis and tyrosine kinase inhibitor therapy
J Rodriguez, A Iniguez, N Jena, P Tata, ZY Liu, AD Lander, J Lowengrub, ...
Elife 12, e84149, 2023
32023
tauFisher accurately predicts circadian time from a single sample of bulk and single-cell transcriptomic data
J Duan, MN Ngo, SS Karri, LC Tsoi, JE Gudjonsson, B Shahbaba, ...
bioRxiv, 2023.04. 04.535473, 2023
22023
Three-dimensional numerical study on wrinkling of vesicles in elongation flow based on the immersed boundary method
W Xiao, K Liu, J Lowengrub, S Li, M Zhao
Physical Review E 107 (3), 035103, 2023
12023
PIEZO1 regulates leader cell formation and cellular coordination during collective cell migration: An integrative multiscale modeling and experimental study
J Holt, J Chen, E Evans, J Lowengrub, MM Pathak
Biophysical Journal 122 (3), 265a, 2023
2023
The liver tumor segmentation benchmark (lits)
P Bilic, P Christ, HB Li, E Vorontsov, A Ben-Cohen, G Kaissis, A Szeskin, ...
Medical Image Analysis 84, 102680, 2023
10602023
Mathematical modeling of cancer immunotherapy for personalized clinical translation
JD Butner, P Dogra, C Chung, R Pasqualini, W Arap, J Lowengrub, ...
Nature computational science 2 (12), 785-796, 2022
152022
PIEZO1 regulates leader cell formation and cellular coordination during collective keratinocyte migration
J Chen, JR Holt, EL Evans, JS Lowengrub, MM Pathak
bioRxiv, 2022.10. 13.512181, 2022
22022
Tumor growth towards lower extracellular matrix conductivity regions under Darcy’s Law and steady morphology
X Zheng, K Zhao, T Jackson, J Lowengrub
Journal of mathematical biology 85 (1), 5, 2022
22022
Correction: Stress generation, relaxation and size control in confined tumor growth
H Yan, D Ramirez-Guerrero, J Lowengrub, M Wu
PLOS Computational Biology 18 (6), e1010288, 2022
22022
Nonlinear simulation of vascular tumor growth with chemotaxis and the control of necrosis
MJ Lu, W Hao, C Liu, J Lowengrub, S Li
Journal of Computational Physics 459, 111153, 2022
82022
Spatial dynamics of feedback and feedforward regulation in cell lineages
P Uhl, J Lowengrub, N Komarova, D Wodarz
PLoS computational biology 18 (5), e1010039, 2022
52022
Electrically controlled self-similar evolution of viscous fingering patterns
PHA Anjos, M Zhao, J Lowengrub, S Li
Physical Review Fluids 7 (5), 053903, 2022
122022
Modelling glioma progression, mass effect and intracranial pressure in patient anatomy
J Lipková, B Menze, B Wiestler, P Koumoutsakos, JS Lowengrub
Journal of the Royal Society Interface 19 (188), 20210922, 2022
102022
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