| Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design L Klarner, TGJ Rudner, GM Morris, CM Deane, YW Teh arXiv preprint arXiv:2407.11942, 2024 | | 2024 |
| Computational mining of B cell receptor repertoires reveals antigen-specific and convergent responses to Ebola vaccination E Richardson, S Bibi, F McLean, L Schimanski, P Rijal, M Ghraichy, ... Frontiers in Immunology 15, 1383753, 2024 | | 2024 |
| How to make machine learning scoring functions competitive with FEP M Warren, C Deane, A Magarkar, G Morris, P Biggin | | 2024 |
| Rapid discovery of monoclonal antibodies by microfluidics-enabled FACS of single pathogen-specific antibody-secreting cells F Hollfelder, K Fischer, A Lulla, T So, P Pereyra-Gerber, M Raybould, ... Nature Research, 2024 | | 2024 |
| CESPED: A benchmark for supervised particle pose estimation in cryo-EM R Sanchez-Garcia, M Saur, J Vargas, C Poelking, CM Deane Physical Review Research 6 (2), 023245, 2024 | | 2024 |
| ABodyBuilder3: Improved and scalable antibody structure predictions H Kenlay, FA Dreyer, D Cutting, D Nissley, CM Deane arXiv preprint arXiv:2405.20863, 2024 | | 2024 |
| The Observed T cell receptor Space database enables paired-chain repertoire mining, coherence analysis and language modelling MIJ Raybould, A Greenshields-Watson, P Agarwal, B Aguilar-Sanjuan, ... bioRxiv, 2024.05. 20.594960, 2024 | 1 | 2024 |
| Prospects for the computational humanization of antibodies and nanobodies GL Gordon, MIJ Raybould, A Wong, CM Deane Frontiers in Immunology 15, 1399438, 2024 | | 2024 |
| De novo antibody design with SE (3) diffusion D Cutting, FA Dreyer, D Errington, C Schneider, CM Deane arXiv preprint arXiv:2405.07622, 2024 | 1 | 2024 |
| AntiFold: Improved antibody structure-based design using inverse folding MH Høie, A Hummer, TH Olsen, B Aguilar-Sanjuan, M Nielsen, ... arXiv preprint arXiv:2405.03370, 2024 | | 2024 |
| AntiFold: Improved antibody structure-based design using inverse folding M Haraldson Høie, A Hummer, TH Olsen, B Aguilar-Sanjuan, M Nielsen, ... arXiv e-prints, arXiv: 2405.03370, 2024 | | 2024 |
| Can AlphaFold’s breakthrough in protein structure help decode the fundamental principles of adaptive cellular immunity? B McMaster, C Thorpe, G Ogg, CM Deane, H Koohy Nature Methods, 1-11, 2024 | 3 | 2024 |
| Prediction of polyspecificity from antibody sequence data by machine learning S Éliás, C Wrzodek, CM Deane, AC Tissot, S Klostermann, F Ros Frontiers in Bioinformatics 3, 1286883, 2024 | 1 | 2024 |
| Large scale paired antibody language models H Kenlay, FA Dreyer, A Kovaltsuk, D Miketa, D Pires, CM Deane arXiv preprint arXiv:2403.17889, 2024 | 3 | 2024 |
| Orthogonal IMiD-Degron Pairs Induce Selective Protein Degradation in Cells PJ Brennan, RE Saunders, M Spanou, M Serafini, L Sun, GP Heger, ... bioRxiv, 2024 | | 2024 |
| Learnt representations of proteins can be used for accurate prediction of small molecule binding sites on experimentally determined and predicted protein structures A Carbery, M Buttenschoen, R Skyner, F von Delft, CM Deane Journal of Cheminformatics 16 (1), 32, 2024 | 5 | 2024 |
| It is theoretically possible to avoid misfolding into non-covalent lasso entanglements using small molecule drugs Y Jiang, CM Deane, GM Morris, EP O’Brien PLoS computational biology 20 (3), e1011901, 2024 | 1 | 2024 |
| Investigating the ability of deep learning-based structure prediction to extrapolate and/or enrich the set of antibody CDR canonical forms A Greenshields-Watson, B Abanades, CM Deane Frontiers in Immunology 15, 1352703, 2024 | 2 | 2024 |
| Fragmenstein: predicting protein-ligand structures of compounds derived from known crystallographic fragment hits using a strict conserved-binding–based methodology MP Ferla, R Sánchez-García, RE Skyner, S Gahbauer, JC Taylor, ... | | 2024 |
| Ultrahigh frequencies of peripherally matured LGI1-and CASPR2-reactive B cells characterize the cerebrospinal fluid in autoimmune encephalitis J Theorell, R Harrison, R Williams, MIJ Raybould, M Zhao, H Fox, A Fower, ... Proceedings of the National Academy of Sciences 121 (7), e2311049121, 2024 | 3 | 2024 |
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