Deletion of exons 2 and 3 from Actb and cell immortalization lead to widespread, β-actin independent alterations in gene expression associated with cell cycle control LJ Sundby, WM Southern, J Sun, X Patrinostro, W Zhang, J Yong, ... European Journal of Cell Biology 103 (2), 151397, 2024 | | 2024 |
Integrating spatial transcriptomics and bulk RNA-seq: predicting gene expression with enhanced resolution through graph attention networks S Baul, K Tanvir Ahmed, Q Jiang, G Wang, Q Li, J Yong, W Zhang Briefings in Bioinformatics 25 (4), 2024 | | 2024 |
A 65-nm RRAM Compute-in-Memory Macro for Genome Processing F Zhang, A Sridharan, W He, I Yeo, M Liehr, W Zhang, N Cady, Y Cao, ... IEEE Journal of Solid-State Circuits, 2024 | | 2024 |
PANDA: Processing in Magnetic Random-Access Memory-Accelerated de Bruijn Graph-Based DNA Assembly S Angizi, NA Fahmi, D Najafi, W Zhang, D Fan Journal of Low Power Electronics and Applications 14 (1), 9, 2024 | | 2024 |
TLCellClassifier: Machine Learning Based Cell Classification for Bright-Field Time-Lapse Images Q Jiang, PR Sudalagunta, M Meads, X Zhao, A Achille, D Noyes, M Silva, ... bioRxiv, 2024.06. 11.598552, 2024 | | 2024 |
Feature Interaction Aware Automated Data Representation Transformation E Azim, D Wang, K Liu, W Zhang, Y Fu Proceedings of the 2024 SIAM International Conference on Data Mining (SDM …, 2024 | | 2024 |
An intrinsic purine metabolite AICAR blocks lung tumour growth by targeting oncoprotein mucin 1 F Aftab, A Rodriguez-Fuguet, L Silva, IS Kobayashi, J Sun, K Politi, ... British Journal of Cancer 128 (9), 1647-1664, 2023 | 5 | 2023 |
AICAR targets oncogenic signaling pathways of MUC1-CT F Aftab, A Rodriguez-Fuguet, L Silva, IS Kobayashi, J Sun, K Politi, ... Cancer Research 83 (7_Supplement), 451-451, 2023 | 1 | 2023 |
Aligner-d: Leveraging in-dram computing to accelerate dna short read alignment F Zhang, S Angizi, J Sun, W Zhang, D Fan IEEE Journal on Emerging and Selected Topics in Circuits and Systems 13 (1 …, 2023 | 5 | 2023 |
Attention-Based Multi-modal Missing Value Imputation for Time Series Data with High Missing Rate KT Ahmed, S Baul, Y Fu, W Zhang Proceedings of the 2023 SIAM International Conference on Data Mining (SDM …, 2023 | 2 | 2023 |
Incomplete time-series gene expression in integrative study for islet autoimmunity prediction K Tanvir Ahmed, S Cheng, Q Li, J Yong, W Zhang Briefings in Bioinformatics 24 (1), bbac537, 2023 | 5 | 2023 |
mTOR contributes to the proteome diversity through transcriptome-wide alternative splicing S Cheng, NA Fahmi, M Park, J Sun, K Thao, HS Yeh, W Zhang, J Yong International journal of molecular sciences 23 (20), 12416, 2022 | 3 | 2022 |
APA-Scan: detection and visualization of 3′-UTR alternative polyadenylation with RNA-seq and 3′-end-seq data NA Fahmi, KT Ahmed, JW Chang, H Nassereddeen, D Fan, J Yong, ... BMC bioinformatics 23 (Suppl 3), 396, 2022 | 4 | 2022 |
omicsGAT: Graph attention network for cancer subtype analyses S Baul, KT Ahmed, J Filipek, W Zhang International Journal of Molecular Sciences 23 (18), 10220, 2022 | 6 | 2022 |
CancerCellTracker: a brightfield time-lapse microscopy framework for cancer drug sensitivity estimation Q Jiang, P Sudalagunta, MC Silva, RR Canevarolo, X Zhao, KT Ahmed, ... Bioinformatics 38 (16), 4002-4010, 2022 | 2 | 2022 |
53BP1-ACLY-SLBP-coordinated activation of replication-dependent histone biogenesis maintains genomic integrity TT Wu, S Jun, EJ Choi, J Sun, EB Yang, HS Lee, SY Kim, NA Fahmi, ... Nucleic acids research 50 (3), 1465-1483, 2022 | 2 | 2022 |
Multi-omics data integration by generative adversarial network KT Ahmed, J Sun, S Cheng, J Yong, W Zhang Bioinformatics 38 (1), 179-186, 2022 | 42 | 2022 |
Exposure to C. Albicans Makes Bladder Epithelial Cells Induce Apoptosis and Modification of Their Microenvironment J Kim, A Yeon, KT Ahmed, W Zhang, KH Kim, WK Kim | | 2021 |
Pim-quantifier: A processing-in-memory platform for mrna quantification F Zhang, S Angizi, NA Fahmi, W Zhang, D Fan 2021 58th ACM/IEEE Design Automation Conference (DAC), 43-48, 2021 | 9 | 2021 |
Lipid Raft Microdomains of Bladder Epithelial Cells Regulates Apoptosis and Microenvironment Upon Exposure to C. albicans J Kim, A Yeon, K Ahmed, W Zhang, KH Kim, WK Kim | | 2021 |