DeepDynaForecast: Phylogenetic-informed graph deep learning for epidemic transmission dynamic prediction C Sun, R Fang, M Salemi, M Prosperi, B Rife Magalis PLOS Computational Biology 20 (4), e1011351, 2024 | 1 | 2024 |
Bacterial DnaK reduces the activity of anti-cancer drugs cisplatin and 5FU F Benedetti, EF Mongodin, JH Badger, A Munawwar, A Cellini, W Yuan, ... Journal of Translational Medicine 22 (1), 269, 2024 | | 2024 |
Oral Cannabidiol Treatment Is Associated with an Anti-Inflammatory Gene Expression Signature in Myeloid Cells of People Living with HIV S Marini, A Huber, MN Cash, M Salemi, RL Cook, P Borsa, CN Mavian Cannabis and Cannabinoid Research, 2024 | | 2024 |
Learning on Forecasting HIV Epidemic Based on Individuals' Contact Networks. C Sun, Y Liu, C Parisi, R Fisk-Hoffman, M Salemi, R Fang, B Danforth, ... BIOSTEC (2), 103-111, 2024 | | 2024 |
Forecasting dominance of SARS-CoV-2 lineages by anomaly detection using deep AutoEncoders S Rancati, G Nicora, M Prosperi, R Bellazzi, M Salemi, S Marini Biorxiv, 2023 | | 2023 |
Ancestral Origin and Dissemination Dynamics of Reemerging Toxigenic Vibrio cholerae, Haiti CN Mavian, MS Tagliamonte, MT Alam, SN Sakib, MN Cash, M Moir, ... Emerging Infectious Diseases 29 (10), 2073, 2023 | 1 | 2023 |
Seafood-Associated Outbreak of ctx-Negative Vibrio mimicus Causing Cholera-Like Illness, Florida, USA MT Alam, SR Stern, D Frison, K Taylor, MS Tagliamonte, SS Nazmus, ... Emerging Infectious Diseases 29 (10), 2141, 2023 | | 2023 |
Network typologies predict future molecular linkages in the network of HIV transmission SN Rich, RL Cook, CN Mavian, K Garrett, EC Spencer, M Salemi, ... Aids 37 (11), 1739-1746, 2023 | 3 | 2023 |
ARCA: the interactive database for arbovirus reported cases in the Americas MV Meneses, A Riva, M Salemi, C Mavian BMC bioinformatics 24 (1), 312, 2023 | 1 | 2023 |
Diversity and Genetic Reassortment of Keystone Virus in Mosquito Populations in Florida MA Elbadry, CA Efstathion, WA Qualls, MS Tagliamonte, MM Alam, ... The American Journal of Tropical Medicine and Hygiene 108 (6), 1256, 2023 | 1 | 2023 |
Infectivity of three Mayaro Virus geographic isolates in human cell lines AR Patel, M Dulcey, N Abid, MN Cash, J Dailey, M Salemi, C Mavian, ... Acta Tropica 242, 106894, 2023 | 2 | 2023 |
Application of Phylodynamic Tools to Inform the Public Health Response to COVID-19: Qualitative Analysis of Expert Opinions SN Rich, V Richards, C Mavian, BR Magalis, N Grubaugh, ... JMIR Formative Research 7 (1), e39409, 2023 | | 2023 |
Machine learning prediction and phyloanatomic modeling of viral neuroadaptive signatures in the macaque model of HIV-mediated neuropathology AS Ramirez-Mata, D Ostrov, M Salemi, S Marini, BR Magalis Microbiology Spectrum 11 (2), e03086-22, 2023 | 2 | 2023 |
Oral CBD treatment is associated to an anti-inflammatory gene expression signature in myeloid cells of people living with HIV S Marini, A Huber, MN Cash, M Salemi, RL Cook, P Borsa, C Mavian medRxiv, 2023.02. 24.23285761, 2023 | 1 | 2023 |
Molecular basis of the toxigenic Vibrio cholerae O1 serotype switch from Ogawa to Inaba in Haiti TK Paisie, MN Cash, MS Tagliamonte, A Ali, JG Morris Jr, M Salemi, ... Microbiology Spectrum 11 (1), e03624-22, 2023 | 4 | 2023 |
Persistence of severe acute respiratory syndrome coronavirus 2 Omicron variant in children and utility of rapid antigen testing as an indicator of culturable virus ZM Lohse, JJ Shapiro, JA Lednicky, MN Cash, I Jun, CN Mavian, ... Clinical Infectious Diseases 76 (3), e491-e494, 2023 | 1 | 2023 |
Genomic epidemiology of the cholera outbreak in Malawi 2022-2023 L Chabuka, WT Choga, CN Mavian, M Moir, H Tegally, E Wilkinson, ... medRxiv, 2023.08. 22.23294324, 2023 | 1 | 2023 |
Molecular epidemiology of HIV-1 Subtype B Infection across Florida reveals few large superclusters with metropolitan origin SN Rich, MCF Prosperi, S Dellicour, B Vrancken, RL Cook, EC Spencer, ... Microbiology Spectrum 10 (6), e01889-22, 2022 | 3 | 2022 |
Transmission cluster characteristics of global, regional, and lineage-specific SARS-CoV-2 phylogenies M Prosperi, B Rife, S Marini, M Salemi 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2022 | 2 | 2022 |
Emergence and evolutionary response of Vibrio cholerae to novel bacteriophage, Democratic Republic of the Congo MT Alam, C Mavian, TK Paisie, MS Tagliamonte, MN Cash, A Angermeyer, ... Emerging Infectious Diseases 28 (12), 2482, 2022 | 4 | 2022 |