3'tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer YW Asmann, EW Klee, EA Thompson, EA Perez, S Middha, AL Oberg, ... BMC genomics 10, 1-11, 2009 | 199 | 2009 |
A comprehensive analysis of breast cancer microbiota and host gene expression KJ Thompson, JN Ingle, X Tang, N Chia, PR Jeraldo, MR Walther-Antonio, ... PloS one 12 (11), e0188873, 2017 | 143 | 2017 |
A comprehensive pan-cancer molecular study of gynecologic and breast cancers AC Berger, A Korkut, RS Kanchi, AM Hegde, W Lenoir, W Liu, Y Liu, ... Cancer cell 33 (4), 690-705. e9, 2018 | 566 | 2018 |
A data science approach for the classification of low-grade and high-grade ovarian serous carcinomas S Lin, C Wang, S Zarei, DA Bell, SE Kerr, GC Runger, JPA Kocher BMC genomics 19, 1-10, 2018 | 3 | 2018 |
A high-throughput-sequence analysis infrastructure technology investigation framework for the evaluation of next-generation sequencing software X Liu, S Middha, S Hart, A Nair, A Hadad, P Duffy, JP Kocher Genome Biology 12, 1-27, 2011 | | 2011 |
A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal component analysis SE Reese, KJ Archer, TM Therneau, EJ Atkinson, CM Vachon, ... Bioinformatics 29 (22), 2877-2883, 2013 | 150 | 2013 |
A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines YW Asmann, A Hossain, BM Necela, S Middha, KR Kalari, Z Sun, ... Nucleic acids research 39 (15), e100-e100, 2011 | 137 | 2011 |
A pan-cancer analysis of enhancer expression in nearly 9000 patient samples H Chen, C Li, X Peng, Z Zhou, JN Weinstein, SJ Caesar-Johnson, ... Cell 173 (2), 386-399. e12, 2018 | 278 | 2018 |
A pan-cancer analysis reveals high-frequency genetic alterations in mediators of signaling by the TGF-β superfamily A Korkut, S Zaidi, RS Kanchi, S Rao, NR Gough, A Schultz, X Li, ... Cell systems 7 (4), 422-437. e7, 2018 | 148 | 2018 |
A potential theragnostic regulatory axis for arthrofibrosis involving adiponectin (ADIPOQ) receptor 1 and 2 (ADIPOR1 and ADIPOR2), TGFβ1, and smooth muscle α-actin (ACTA2) B Bayram, AR Owen, A Dudakovic, L Dagneaux, TW Turner, ... Journal of Clinical Medicine 9 (11), 3690, 2020 | 7 | 2020 |
A sequence-based variation map of zebrafish A Patowary, R Purkanti, M Singh, R Chauhan, AR Singh, M Swarnkar, ... Zebrafish 10 (1), 15-20, 2013 | 45 | 2013 |
A Sequence-Based Variation Map of Zebrafish A Patowary, R Purkanti, M Singh, RK Chauhan, AR Singh, M Swarnkar, ... A Sequence-Based Variation Map of Zebrafish 10 (1), 10-1089, 2013 | | 2013 |
A stability-driven protocol for drug response interpretable prediction (staDRIP) X Li, TM Tang, X Wang, JPA Kocher, B Yu arXiv preprint arXiv:2011.06593, 2020 | 6 | 2020 |
A tool to predict post-transcriptional instability related to the dysregulation of the SETD2 histone methyltransferase in renal cell carcinoma (RCC). MD Champion, H Yan, J Evans, J Nie, JH Lee, JI Davila, R Moore, ... Journal of Clinical Oncology 32 (15_suppl), 11072-11072, 2014 | | 2014 |
Aberrant immunohistochemical expression of CD4 as a rare finding in metastatic melanoma. K Chatzopoulos, DR O'Brien, S Sotiriou, K Khazaie, J Jen, JPA Kocher, ... Journal of Cutaneous Pathology 47 (12), 2020 | 1 | 2020 |
Aberrant monocyte prostaglandin synthase 2 (PGS2) expression in type 1 diabetes before and after disease onset SA Litherland, JX She, D Schatz, K Fuller, AD Hutson, RH Peng, Y Li, ... Pediatric diabetes 4 (1), 10-18, 2003 | 34 | 2003 |
Aberrant signature methylome by DNMT1 hot spot mutation in hereditary sensory and autonomic neuropathy 1E Z Sun, Y Wu, T Ordog, S Baheti, J Nie, X Duan, K Hojo, JP Kocher, ... Epigenetics 9 (8), 1184-1193, 2014 | 73 | 2014 |
Abstract LB-276: Fusion transcripts in breast cancer cell lines and tumors EA Thompson, YW Asmann, BM Necela, KR Kalari, DW Williamson, ... Cancer Research 71 (8_Supplement), LB-276-LB-276, 2011 | | 2011 |
Abstract P6-10-06: Histologic features of benign breast biopsy tissue and association with ER positive and ER negative breast cancer in the Mayo BBD cohort study AC Degnim, DC Radisky, RA Vierkant, RD Frank, MH Frost, VS Pankratz, ... Cancer Research 75 (9_Supplement), P6-10-06-P6-10-06, 2015 | | 2015 |
Accurate Strategies to Detect Clinical Important Long Indels from RNA-Seq Data: EGFR as Example Z Sun, N Prodduturi, A Bhagwate, J Jang, J Jen, P Yang, JP Kocher JOURNAL OF THORACIC ONCOLOGY 10 (9), S707-S707, 2015 | | 2015 |