| A comparative analysis of the Lyve-SET phylogenomics pipeline for genomic epidemiology of foodborne pathogens LS Katz, T Griswold, AJ Williams-Newkirk, D Wagner, A Petkau, C Sieffert, ... Frontiers in Microbiology 8, 375, 2017 | 128 | 2017 |
| A quasimetagenomics method for concerted detection and subtyping of Salmonella enterica and E. coli O157: H7 from romaine lettuce A Townsend, S Li, DA Mann, X Deng Food Microbiology 92, 103575, 2020 | 19 | 2020 |
| Applied genomics of foodborne pathogens X Deng, HC Den Bakker, RS Hendriksen Springer, 2017 | 19 | 2017 |
| Bioinformatics Aspects of Foodborne Pathogen Research HC den Bakker, LK Strawn, X Deng Applied Genomics of Foodborne Pathogens, 51-64, 2017 | | 2017 |
| Centralized industrialization of pork in Europe and America contributes to the global spread of Salmonella enterica H Li, Y Wu, D Feng, Q Jiang, S Li, J Rong, L Zhong, U Methner, L Baxter, ... Nature Food, 1-10, 2024 | 1 | 2024 |
| Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis X Deng, N Shariat, EM Driebe, CC Roe, B Tolar, E Trees, P Keim, ... Journal of clinical microbiology 53 (1), 212-218, 2015 | 135 | 2015 |
| Comparative genomics unveils extensive genomic variation between populations of Listeria species in natural and food-associated environments J Liao, X Guo, S Li, SMB Anupoju, RA Cheng, DL Weller, G Sullivan, ... ISME communications 3 (1), 85, 2023 | 5 | 2023 |
| Comparison between qPCR, VIDAS immunoassays, and agar streaking for the detection of Listeria monocytogenes from food and environmental surfaces containing and not containing … Z Xian, J Yoo, C Patel, H Yang, X Deng, T Hammack, Y Chen Journal of Food Protection 86 (5), 100013, 2023 | 5 | 2023 |
| Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings NA Feasey, J Hadfield, KH Keddy, TJ Dallman, J Jacobs, X Deng, ... Nature genetics 48 (10), 1211-1217, 2016 | 195 | 2016 |
| Distributed genotyping and clustering of Neisseria strains reveal continual emergence of epidemic meningococcus over a century L Zhong, M Zhang, L Sun, Y Yang, B Wang, H Yang, Q Shen, Y Xia, J Cui, ... Nature Communications 14 (1), 7706, 2023 | 3 | 2023 |
| Draft genome sequences and resistome analysis of multidrug-resistant mcr-1-harbouring Escherichia coli isolated from pre-harvest poultry in Lebanon II Kassem, D Mann, S Li, X Deng Journal of global antimicrobial resistance 25, 114-116, 2021 | 13 | 2021 |
| Draft Genome Sequences of Antibiotic-Resistant Serratia sp. Strains Isolated from Raw Sewage and Sediment Sludge in Georgia, USA J Hassan, MA Esseili, D Mann, M Osman, S Li, X Deng, II Kassem Microbiology Resource Announcements 11 (12), e00965-22, 2022 | 3 | 2022 |
| Draft Genome Sequences of Colistin-Resistant and mcr-1.1-Carrying Escherichia coli Strains Isolated from Irrigation Water NA Nasser, D Mann, S Li, X Deng, II Kassem Microbiology Resource Announcements 10 (14), 10.1128/mra. 00120-21, 2021 | 5 | 2021 |
| Draft Genome Sequences of Multidrug-Resistant and mcr-1.1-Harboring Escherichia coli Isolated from Drinking and Well Waters Used in Syrian Refugee Camps NA Nasser, A Alhaj Sulaiman, D Mann, S Li, X Deng, II Kassem Microbiology Resource Announcements 10 (2), 10.1128/mra. 01252-20, 2021 | 6 | 2021 |
| Efficient oligonucleotide probe selection for pan-genomic tiling arrays AM Phillippy, X Deng, W Zhang, SL Salzberg BMC bioinformatics 10, 1-11, 2009 | 31 | 2009 |
| Emergence of the Mobile Colistin Resistance Gene mcr-1 in Multidrug-Resistant Escherichia coli Isolated from the Fecal Matter of Toddlers in a Community J Hassan, D Mann, S Li, X Deng, II Kassem Antimicrobial Agents and Chemotherapy 65 (5), 10.1128/aac. 00243-21, 2021 | 13 | 2021 |
| Emerging applications of machine learning in food safety X Deng, S Cao, AL Horn Annual Review of Food Science and Technology 12 (1), 513-538, 2021 | 90 | 2021 |
| Emerging Opportunities for Machine Learning in Food Safety: Potential and Pitfalls X Deng, S Cao, AL Horn | | |
| Evaluation of multiplex nanopore sequencing for Salmonella serotype prediction and antimicrobial resistance gene and virulence gene detection X Wu, H Luo, C Ge, F Xu, X Deng, M Wiedmann, RC Baker, AE Stevenson, ... Frontiers in Microbiology 13, 1073057, 2023 | 4 | 2023 |
| Evaluation of nanopore sequencing technology to identify Salmonella enterica Choleraesuis var. Kunzendorf and Orion var. 15+, 34+ F Xu, C Ge, S Li, S Tang, X Wu, H Luo, X Deng, G Zhang, A Stevenson, ... International Journal of Food Microbiology 346, 109167, 2021 | 9 | 2021 |
