| Assigning scRNA-seq data to known and de novo cell types using CellAssign AW Zhang, KR Campbell, SP Shah | 2 | 2019 |
| Cancer stemness, intratumoral heterogeneity, and immune response across cancers A Miranda, PT Hamilton, AW Zhang, S Pattnaik, E Becht, A Mezheyeuski, ... Proceedings of the National Academy of Sciences 116 (18), 9020-9029, 2019 | 413 | 2019 |
| Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas A Mathelier, C Lefebvre, AW Zhang, DJ Arenillas, J Ding, WW Wasserman, ... Genome biology 16, 1-17, 2015 | 50 | 2015 |
| Clonal fitness inferred from time-series modelling of single-cell cancer genomes S Salehi, F Kabeer, N Ceglia, M Andronescu, MJ Williams, KR Campbell, ... Nature 595 (7868), 585-590, 2021 | 101 | 2021 |
| Co-pilot: Dynamic top-down point cloud with conditional neighborhood aggregation for multi-gigapixel histopathology image representation R Nakhli, A Zhang, A Mirabadi, K Rich, M Asadi, B Gilks, H Farahani, ... Proceedings of the IEEE/CVF International Conference on Computer Vision …, 2023 | 4 | 2023 |
| Computational analysis of transcriptional regulation sites at the HTT gene locus RAG De Souza, N Kosior, SB Thomson, A Mathelier, AW Zhang, ... Journal of Huntington's disease 7 (3), 223-237, 2018 | 3 | 2018 |
| Computational modelling in single-cell cancer genomics: methods and future directions AW Zhang, KR Campbell Physical biology 17 (6), 061001, 2020 | 7 | 2020 |
| CuboCube: Student creation of a cancer genetics e-textbook using open-access software for social learning P Seid-Karbasi, XC Ye, AW Zhang, N Gladish, SYS Cheng, K Rothe, ... Plos Biology 15 (3), e2001192, 2017 | 7 | 2017 |
| Deep learning-based histotype diagnosis of ovarian carcinoma whole-slide pathology images H Farahani, J Boschman, D Farnell, A Darbandsari, A Zhang, ... Modern Pathology 35 (12), 1983-1990, 2022 | 35 | 2022 |
| Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses CH O’Flanagan, KR Campbell, AW Zhang, F Kabeer, JLP Lim, J Biele, ... Genome biology 20, 1-13, 2019 | 220 | 2019 |
| Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer A McPherson, A Roth, E Laks, T Masud, A Bashashati, AW Zhang, G Ha, ... Nature genetics 48 (7), 758-767, 2016 | 354 | 2016 |
| Evolutionary dynamics of ovarian cancer microenvironments and tumour cells AW Zhang University of British Columbia, 2019 | | 2019 |
| Genomic consequences of aberrant DNA repair mechanisms stratify ovarian cancer histotypes YK Wang, A Bashashati, MS Anglesio, DR Cochrane, DS Grewal, G Ha, ... Nature genetics 49 (6), 856-865, 2017 | 259 | 2017 |
| GRASP: GRAph-Structured Pyramidal Whole Slide Image Representation A Khajegili Mirabadi, G Archibald, A Darbandsari, A Contreras-Sanz, ... arXiv e-prints, arXiv: 2402.03592, 2024 | | 2024 |
| GRASP: GRAph-Structured Pyramidal Whole Slide Image Representation AK Mirabadi, G Archibald, A Darbandsari, A Contreras-Sanz, RE Nakhli, ... arXiv preprint arXiv:2402.03592, 2024 | 2 | 2024 |
| Immune and malignant cell phenotypes of ovarian cancer are determined by distinct mutational processes I Vázquez-García, F Uhlitz, N Ceglia, JLP Lim, M Wu, N Mohibullah, ... bioRxiv, 2021.08. 24.454519, 2021 | 6 | 2021 |
| Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models T Funnell, AW Zhang, D Grewal, S McKinney, A Bashashati, YK Wang, ... PLoS computational biology 15 (2), e1006799, 2019 | 70* | 2019 |
| Interfaces of malignant and immunologic clonal dynamics in ovarian cancer AW Zhang, A McPherson, K Milne, DR Kroeger, PT Hamilton, A Miranda, ... Cell 173 (7), 1755-1769. e22, 2018 | 314 | 2018 |
| JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles A Mathelier, X Zhao, AW Zhang, F Parcy, R Worsley-Hunt, DJ Arenillas, ... Nucleic acids research 42 (D1), D142-D147, 2014 | 1171 | 2014 |
| JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles A Mathelier, O Fornes, DJ Arenillas, C Chen, G Denay, J Lee, W Shi, ... Nucleic acids research 44 (D1), D110-D115, 2016 | 1118 | 2016 |
