| A Framework for Incorporating Functional Interrelationships into Protein Function Prediction Algorithms XF Zhang, DQ Dai IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) 9 …, 2012 | 51 | 2012 |
| A graph regularized generalized matrix factorization model for predicting links in biomedical bipartite networks ZC Zhang, XF Zhang, M Wu, L Ou-Yang, XM Zhao, XL Li Bioinformatics 36 (11), 3474-3481, 2020 | 60 | 2020 |
| A joint graphical model for inferring gene networks across multiple subpopulations and data types XF Zhang, L Ou-Yang, T Yan, XT Hu, H Yan IEEE transactions on cybernetics 51 (2), 1043-1055, 2019 | 18 | 2019 |
| A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks L Ou-Yang, H Yan, XF Zhang BMC bioinformatics 18, 23-34, 2017 | 27 | 2017 |
| A two-layer integration framework for protein complex detection L Ou-Yang, M Wu, XF Zhang, DQ Dai, XL Li, H Yan BMC bioinformatics 17, 1-14, 2016 | 20 | 2016 |
| Biomarker identification and cancer classification based on microarray data using laplace naive bayes model with mean shrinkage MY Wu, DQ Dai, Y Shi, H Yan, XF Zhang IEEE/ACM transactions on computational biology and bioinformatics 9 (6 …, 2012 | 57 | 2012 |
| Cancer subtype discovery and biomarker identification via a new robust network clustering algorithm MY Wu, DQ Dai, XF Zhang, Y Zhu PloS one 8 (6), e66256, 2013 | 28 | 2013 |
| Cell-type annotation with accurate unseen cell-type identification using multiple references YX Xiong, MG Wang, L Chen, XF Zhang PLOS Computational Biology 19 (6), e1011261, 2023 | 2 | 2023 |
| Comparative analysis of housekeeping and tissue-specific driver nodes in human protein interaction networks XF Zhang, L Ou-Yang, DQ Dai, MY Wu, Y Zhu, H Yan Bmc Bioinformatics 17, 1-14, 2016 | 15 | 2016 |
| Detecting overlapping protein complexes based on a generative model with functional and topological properties XF Zhang, DQ Dai, L Ou-Yang, H Yan BMC bioinformatics 15, 1-15, 2014 | 54 | 2014 |
| Detecting protein complexes from signed protein-protein interaction networks L Ou-Yang, DQ Dai, XF Zhang IEEE/ACM transactions on computational biology and bioinformatics 12 (6 …, 2015 | 47 | 2015 |
| Detecting temporal protein complexes from dynamic protein-protein interaction networks L Ou-Yang, DQ Dai, XL Li, M Wu, XF Zhang, P Yang BMC bioinformatics 15, 1-14, 2014 | 78 | 2014 |
| Determining minimum set of driver nodes in protein-protein interaction networks XF Zhang, L Ou-Yang, Y Zhu, MY Wu, DQ Dai BMC bioinformatics 16, 1-13, 2015 | 72 | 2015 |
| Differential network analysis by simultaneously considering changes in gene interactions and gene expression JJ Tu, L Ou-Yang, Y Zhu, H Yan, H Qin, XF Zhang Bioinformatics 37 (23), 4414-4423, 2021 | 21 | 2021 |
| Differential network analysis from cross-platform gene expression data XF Zhang, L Ou-Yang, XM Zhao, H Yan Scientific reports 6 (1), 34112, 2016 | 47 | 2016 |
| Differential network analysis via weighted fused conditional Gaussian graphical model L Ou-Yang, XF Zhang, X Hu, H Yan IEEE/ACM transactions on computational biology and bioinformatics 17 (6 …, 2019 | 3 | 2019 |
| DiffGraph: an R package for identifying gene network rewiring using differential graphical models XF Zhang, L Ou-Yang, S Yang, X Hu, H Yan Bioinformatics 34 (9), 1571-1573, 2018 | 18 | 2018 |
| DiffNetFDR: differential network analysis with false discovery rate control XF Zhang, L Ou-Yang, S Yang, X Hu, H Yan Bioinformatics 35 (17), 3184-3186, 2019 | 16 | 2019 |
| Ec-pgmgr: ensemble clustering based on probability graphical model with graph regularization for single-cell rna-seq data Y Zhu, DX Zhang, XF Zhang, M Yi, L Ou-Yang, M Wu Frontiers in genetics 11, 572242, 2020 | 5 | 2020 |
| EnDecon: cell type deconvolution of spatially resolved transcriptomics data via ensemble learning JJ Tu, HS Li, H Yan, XF Zhang Bioinformatics 39 (1), btac825, 2023 | 13 | 2023 |
Le Ou-YangShenzhen University在 szu.edu.cn 的电子邮件经过验证
